View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_48 (Length: 365)
Name: NF8905A_low_48
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_48 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] chr4 (4 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] chr1 (2 HSPs) |
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| [»] scaffold0079 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 2 - 365
Target Start/End: Complemental strand, 183539 - 183176
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183539 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
183440 |
T |
|
| Q |
102 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183439 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
183340 |
T |
|
| Q |
202 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccaacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaagga |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183339 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaagga |
183240 |
T |
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| Q |
302 |
actcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
365 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
183239 |
actcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
183176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 2 - 365
Target Start/End: Original strand, 493977 - 494340
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493977 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
494076 |
T |
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| Q |
102 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494077 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
494176 |
T |
|
| Q |
202 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccaacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaagga |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494177 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaagga |
494276 |
T |
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| Q |
302 |
actcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
365 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
494277 |
actcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
494340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 2 - 365
Target Start/End: Original strand, 18191638 - 18192002
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191638 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
18191737 |
T |
|
| Q |
102 |
tgttttttcagggtaagaagggg-tagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaaga |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191738 |
tgttttttcagggtaagaagggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaaga |
18191837 |
T |
|
| Q |
201 |
aaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccaacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaagg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
18191838 |
aaagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccgacacaggtgggtaggtacagaatacctaggggcgcgagacaactctctctaagg |
18191937 |
T |
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| Q |
301 |
aactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18191938 |
aactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
18192002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 365
Target Start/End: Complemental strand, 16337426 - 16337353
Alignment:
| Q |
292 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
365 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16337426 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
16337353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 42247850 - 42247894
Alignment:
| Q |
297 |
aaggaactcggcaaaatagccccgtaacttcgggagaaggggtgc |
341 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
42247850 |
aaggaactcggcaaaatgaccccgtaacttcgggagaaggggtgc |
42247894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 2 - 365
Target Start/End: Original strand, 34658976 - 34659339
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34658976 |
caggtgaatattcctgtactacctcttgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccc |
34659075 |
T |
|
| Q |
102 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659076 |
tgttttttcagggtaagaaggggtagagaaaatgcctccagccaagattcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaa |
34659175 |
T |
|
| Q |
202 |
aagctcgaacgaccttaaacaaaagggtacctgtacccgaaaccaacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaagga |
301 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659176 |
aagctcgaacgaccttaaacaaaatggtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaagga |
34659275 |
T |
|
| Q |
302 |
actcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
365 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34659276 |
acttggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
34659339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 8174936 - 8174997
Alignment:
| Q |
73 |
ttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtagagaaaatg |
135 |
Q |
| |
|
||||||||||||| |||||||||| ||| ||||||| ||||||||||||| ||||||||||| |
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| T |
8174936 |
ttatcggttcaagcacacaaggtg-cccttgtttttgtagggtaagaagggatagagaaaatg |
8174997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 28 - 365
Target Start/End: Original strand, 14404532 - 14404869
Alignment:
| Q |
28 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404532 |
tgttggtcccgagggacggaggaggctaggttagccgaaagatggttatcggttcaagaacacaaggtgccccctgttttttcagggtaagaaggggtag |
14404631 |
T |
|
| Q |
128 |
agaaaatgcctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
227 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404632 |
agaaaatggctccagccaaggttcgagtacgaggcgctccggcgctgaagtaattgatgccatactcccaagaaaagctcgaacgaccttaaacaaaagg |
14404731 |
T |
|
| Q |
228 |
gtacctgtacccgaaaccaacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
327 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14404732 |
gtacctgtacccgaaaccgacacaggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgtaacttc |
14404831 |
T |
|
| Q |
328 |
gggagaaggggtgcctcctcacaaagggggtcgcagtg |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
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| T |
14404832 |
gggagaaggggtgcctcctcacaaagggggtcgcagtg |
14404869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 2 - 35
Target Start/End: Complemental strand, 45610235 - 45610202
Alignment:
| Q |
2 |
caggtgaatattcctgtactacctcttgttggtc |
35 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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| T |
45610235 |
caggtgaatattcctgtactacctcttgttggtc |
45610202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 292 - 365
Target Start/End: Original strand, 55434 - 55507
Alignment:
| Q |
292 |
tctctaaggaactcggcaaaatagccccgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
365 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55434 |
tctctaaggaactcggcaaactagccatgtaacttcgggagaaggggtgcctcctcacaaagggggtcgcagtg |
55507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 322
Target Start/End: Complemental strand, 7869347 - 7869276
Alignment:
| Q |
251 |
aggtgggtaggtagagaatacctaggggcgcgagacaactctctctaaggaactcggcaaaatagccccgta |
322 |
Q |
| |
|
|||||||||||||||||||||||||| | | |||||||| |||||||||||||||| ||||||| |||||| |
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|
| T |
7869347 |
aggtgggtaggtagagaatacctaggagtgtgagacaaccctctctaaggaactcgataaaatagacccgta |
7869276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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