View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_51 (Length: 362)

Name: NF8905A_low_51
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_51
NF8905A_low_51
[»] chr4 (4 HSPs)
chr4 (18-346)||(5313554-5313886)
chr4 (145-251)||(16839429-16839535)
chr4 (152-342)||(11355130-11355322)
chr4 (33-85)||(11355384-11355436)
[»] chr1 (2 HSPs)
chr1 (143-345)||(30737674-30737880)
chr1 (106-233)||(28451574-28451701)
[»] chr6 (1 HSPs)
chr6 (37-251)||(7499954-7500168)
[»] chr5 (2 HSPs)
chr5 (37-251)||(9504983-9505197)
chr5 (18-161)||(33050399-33050542)
[»] chr2 (3 HSPs)
chr2 (145-251)||(45495640-45495746)
chr2 (145-251)||(45503382-45503488)
chr2 (37-242)||(5986896-5987101)
[»] scaffold0014 (1 HSPs)
scaffold0014 (152-251)||(62533-62632)


Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 5313554 - 5313886
Alignment:
Q  18 gtatctggatacacgatgctcaaatcacatgacatgtaaaa-agtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataa 116  Q
    |||| |||||||||||||||||||||| |||||| |||||| ||||||||||||| |||||||||| |||||||||  ||||||||||||||||||||||    
T  5313554 gtatatggatacacgatgctcaaatcatatgacaggtaaaaaagtcttggttctctgagttagatggttcaattagtaaaaagacaagatttgcaaataa 5313653  T
Q  117 tagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgaga 216  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| ||||| | ||||||||||    
T  5313654 tagtatagtttgtgttaaaggaactagtaaagtattgattcatagaaaagatggcaagaaaacatatatcactgatgtattgtatgttcaaaatatgaga 5313753  T
Q  217 agtaatctcattagtataggccaattgctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg-ttttttattgcaagaatagattgatc 313  Q
    |||||||||||||||| ||||||||||||||||||||  | ||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  5313754 agtaatctcattagtacaggccaattgctgcaaaatgtatatactatgaaaatggaagcacatgctacaagggtttttttattgcaagaatagattgatc 5313853  T
Q  314 ttgaaggctccattgtcaaagaagagaactttc 346  Q
    ||||||||||||||||||||||||| |||||||    
T  5313854 ttgaaggctccattgtcaaagaagaaaactttc 5313886  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 16839535 - 16839429
Alignment:
Q  145 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 244  Q
    |||||| |||||||||  || |||||||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  16839535 aaagtactgattcataagaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 16839436  T
Q  245 tgcaaaa 251  Q
    |||||||    
T  16839435 tgcaaaa 16839429  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 152 - 342
Target Start/End: Complemental strand, 11355322 - 11355130
Alignment:
Q  152 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 251  Q
    |||||||| | ||||||||||||||||| |  ||||||| ||| |||||||| ||||| ||||  |||||||||||||||||||| || ||  |||| ||    
T  11355322 tgattcatgggaaagatggcaagaaagcttgcattactggtgtgttatatgtgccaaacatgaagagtaatctcattagtataggtcagttattgcagaa 11355223  T
Q  252 tg--tctactacgaaaatggaagcacatgctataagggttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaagagaac 342  Q
     |  | ||||| ||||||||| | |||  |||| | ||||||| |  ||||||  ||||||||  | |||||||||||||||||||| |||||    
T  11355222 aggctatactatgaaaatggaggaacaaactatgatggtttttgacagcaagagaagattgattctaaaggctccattgtcaaagaaaagaac 11355130  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 11355436 - 11355384
Alignment:
Q  33 atgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgatt 85  Q
    ||||||||| ||||||||| |||||| ||| ||||| || |||||||||||||    
T  11355436 atgctcaaagcacatgacaggtaaaatgtcatggttttctgagttagatgatt 11355384  T

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Target: chr1 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 143 - 345
Target Start/End: Original strand, 30737674 - 30737880
Alignment:
Q  143 gtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaatt 242  Q
    ||||||||||||||||||||||| ||||||||||||||| ||| | |||||| |||||||| |||||||||||||||||||||||||||||||| |||||    
T  30737674 gtaaagtattgattcatagaaaaaatggcaagaaagcatgtatcattgatgtgttatatgtgccaaatatgagaagtaatctcattagtataggtcaatt 30737773  T
Q  243 gctgcaaaatg--tctactacgaaaatggaagcacatgctataaggg--ttttttattgcaagaatagattgatcttgaaggctccattgtcaaagaaga 338  Q
     |||||||| |  | | |||  || ||||||||| |  |||| ||||  |||||||||| ||| |||| |||||| |||| || || ||||||||| |||    
T  30737774 actgcaaaagggttgtgctattaagatggaagcaaaaactatgagggttttttttattggaaggataggttgatcctgaaagccccgttgtcaaagcaga 30737873  T
Q  339 gaacttt 345  Q
    |||||||    
T  30737874 gaacttt 30737880  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 28451701 - 28451574
Alignment:
Q  106 tttgcaaataatagtatagtttgtgttaaaagaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtac 205  Q
    |||||| ||||||| ||||| |||| | || ||| | ||||||||   ||||| | |||||||||||||||||||| ||| ||| |||| || ||||| |    
T  28451701 tttgcagataatagaatagtgtgtgctgaaggaattggtaaagtaccaattcacataaaagatggcaagaaagcatatatcacttatgtgttttatgtgc 28451602  T
Q  206 caaatatgagaagtaatctcattagtat 233  Q
     |||||||||||| ||||| || |||||    
T  28451601 taaatatgagaagcaatcttatgagtat 28451574  T

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Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 37 - 251
Target Start/End: Complemental strand, 7500168 - 7499954
Alignment:
Q  37 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 136  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | ||| ||||||||||||   |      
T  7500168 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagagaatcgtatagtttgtgcagatg 7500069  T
Q  137 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 236  Q
    | | | | |||||| |||||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  7500068 gtattgggaaagtactgattcataggaaggatgacaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 7499969  T
Q  237 ccaattgctgcaaaa 251  Q
      |||| ||||||||    
T  7499968 ttaattactgcaaaa 7499954  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 251
Target Start/End: Original strand, 9504983 - 9505197
Alignment:
Q  37 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 136  Q
    ||||||||||||||||| || || ||||||||||| || |||||||||||| |||    ||| | |||||||||| | |||| |||||||||||          
T  9504983 tcaaatcacatgacatgcaagaaatcttggttctctgaattagatgattcagttaatagaaaaataagatttgcagacaatattatagtttgtgcagctg 9505082  T
Q  137 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 236  Q
    | | | | |||||| | |||||||| || |||| ||||||||| |  || |||||||| || ||||||||||| |||||||| |||||||||||||| ||    
T  9505083 gtattgggaaagtactaattcataggaaggatgtcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattgg 9505182  T
Q  237 ccaattgctgcaaaa 251  Q
     ||||| || |||||    
T  9505183 tcaattactacaaaa 9505197  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 33050399 - 33050542
Alignment:
Q  18 gtatctggatacacgatgctcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataat 117  Q
    ||||||||||||| ||||||||||| |||| |||||| |||||||||||| |||  | |||||| |||||||||    ||||| |||||| ||| |||||    
T  33050399 gtatctggatacatgatgctcaaattacataacatgttaaaagtcttggtactctaaattagattattcaattaatagaaagataagattcgcagataat 33050498  T
Q  118 agtatagtttgtgttaaaagaactagtaaagtattgattcatag 161  Q
    ||||| | || |||| || ||| | |||| || |||||||||||    
T  33050499 agtatcgattatgttgaaggaaatggtaatgtgttgattcatag 33050542  T

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Target: chr2 (Bit Score: 47; Significance: 9e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 45495746 - 45495640
Alignment:
Q  145 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 244  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45495746 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45495647  T
Q  245 tgcaaaa 251  Q
    |||||||    
T  45495646 tgcaaaa 45495640  T

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Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 145 - 251
Target Start/End: Complemental strand, 45503488 - 45503382
Alignment:
Q  145 aaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgc 244  Q
    |||||| |||||||||| || |||||||||||||| |  || | |||||| || ||||||||||| |||||||| |||||||||||||| || ||||| |    
T  45503488 aaagtactgattcataggaaggatggcaagaaagcttgcatcattgatgtgttgtatgtaccaaacatgagaagcaatctcattagtattggtcaattac 45503389  T
Q  245 tgcaaaa 251  Q
    |||||||    
T  45503388 tgcaaaa 45503382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 37 - 242
Target Start/End: Original strand, 5986896 - 5987101
Alignment:
Q  37 tcaaatcacatgacatgtaaaaagtcttggttctccgagttagatgattcaattagcgaaaagacaagatttgcaaataatagtatagtttgtgttaaaa 136  Q
    |||||||||||||||   || || ||||||||||| || |||||||||||| ||| |  ||| | |||||||||| | ||||||||||||||||     |    
T  5986896 tcaaatcacatgacagacaagaaatcttggttctctgaattagatgattcagttaacagaaaaataagatttgcagacaatagtatagtttgtgcagcta 5986995  T
Q  137 gaactagtaaagtattgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtatagg 236  Q
      | | | |||||| |||||||||| || |||||||||||||| |  || |||||||| || ||||||||||| |||||||  | |||||||||||| ||    
T  5986996 atattggaaaagtactgattcataggaaggatggcaagaaagcttgcatcactgatgtgttgtatgtaccaaacatgagaaacagtctcattagtattgg 5987095  T
Q  237 ccaatt 242  Q
     |||||    
T  5987096 tcaatt 5987101  T

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Target: scaffold0014 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 62533 - 62632
Alignment:
Q  152 tgattcatagaaaagatggcaagaaagcatctattactgatgtattatatgtaccaaatatgagaagtaatctcattagtataggccaattgctgcaaaa 251  Q
    |||||||||| || |||||||||| ||| |  || |||||||| || ||||||||||| |||||||| ||||||| |||||| || |||||  |||||||    
T  62533 tgattcataggaaggatggcaagagagcctgcatcactgatgtgttgtatgtaccaaacatgagaagcaatctcagtagtattggtcaattattgcaaaa 62632  T

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