View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_56 (Length: 351)
Name: NF8905A_low_56
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_56 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 160 - 351
Target Start/End: Original strand, 53012860 - 53013051
Alignment:
| Q |
160 |
catttgcttcttaaaagcatggtttcgggttggaattcgtacgaaaatgtttaaactaacaatatcgatatttatcgatttgagttaagttttatgaaca |
259 |
Q |
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| T |
53012860 |
catttgcttcttaaaagcatggtttcaggttggaattcgtacgaaaatgtttaaactaacaatatcgatatttatcggtttgagttaagttttatgaaca |
53012959 |
T |
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| Q |
260 |
aatataaagagtgaatgctatactgtaaaattatagatagcaatattttcaaccgtaacaatcattacaagattttgttattagtgatatga |
351 |
Q |
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| T |
53012960 |
aatataaagagtgaatgttgtactgtaaaattatagatagcaatattttcaaccgtaacaatcattacaagattttgttattagtgatatga |
53013051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 53012711 - 53012828
Alignment:
| Q |
2 |
atatatcactaccaagtgtacatgttcaaatctctatttgtggcacatataatataattgaacgttttcacaaaacttgttttacacaaacaaattaaat |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53012711 |
atatatcactaccaagtgtacatgttcaaatctctatttgtggcacatataatataattgaacgttttcacaaaacttgttttacacaaacaaattaaat |
53012810 |
T |
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| Q |
102 |
tcttagtttgatatttac |
119 |
Q |
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| T |
53012811 |
tcttagtttgatatttac |
53012828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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