View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_57 (Length: 350)
Name: NF8905A_low_57
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 4274313 - 4274629
Alignment:
| Q |
1 |
attggaacacgccaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttaggnnnnnnnn-ttattggacttgttagaatat |
99 |
Q |
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| T |
4274313 |
attggaacacgcaaggaaaaatttaaagattgtttagtttaagaaaaacaaattcggattaacatttaggaaaaaaaaattattggacttattagaatat |
4274412 |
T |
|
| Q |
100 |
tttgtcgttaacactatatgtatgacatgaactgagtcagtagataagaataaagagaataacataaatttttccatttacaagactcaacctcatatcg |
199 |
Q |
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| T |
4274413 |
tttgtcgtttacactatatgtatgacatgaactgagtcagtagataagaataaagggaataacataaatttttccatttacaagattcaacctcatatcg |
4274512 |
T |
|
| Q |
200 |
tacttaggagcaccaaactttcttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacattaaggatagtaatgga |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4274513 |
tacttaggagcaccaaactttcttgccacttgaaccaacattcgtcggtaaatttaaagatctttgaaatgacaatcgtaacattaaggatagtaatgga |
4274612 |
T |
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| Q |
300 |
ttgccacaatatcaaaa |
316 |
Q |
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||||||||||||||||| |
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| T |
4274613 |
ttgccacaatatcaaaa |
4274629 |
T |
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