View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_60 (Length: 345)

Name: NF8905A_low_60
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_60
NF8905A_low_60
[»] chr7 (6 HSPs)
chr7 (110-329)||(47543398-47543617)
chr7 (110-227)||(4609652-4609769)
chr7 (110-265)||(10315043-10315198)
chr7 (110-265)||(31030341-31030496)
chr7 (118-236)||(17116404-17116522)
chr7 (137-234)||(38153904-38154001)
[»] chr1 (17 HSPs)
chr1 (113-329)||(32160044-32160259)
chr1 (108-274)||(15259370-15259536)
chr1 (155-256)||(26260768-26260869)
chr1 (137-241)||(27568382-27568486)
chr1 (137-267)||(27363725-27363855)
chr1 (140-249)||(44675097-44675206)
chr1 (289-329)||(1951913-1951953)
chr1 (113-207)||(38133069-38133163)
chr1 (172-214)||(9484879-9484921)
chr1 (132-236)||(12688172-12688276)
chr1 (146-214)||(25392345-25392413)
chr1 (140-230)||(4889452-4889542)
chr1 (150-224)||(27264588-27264662)
chr1 (137-230)||(6723718-6723811)
chr1 (137-190)||(10686232-10686285)
chr1 (131-236)||(48973644-48973749)
chr1 (197-261)||(36098596-36098660)
[»] chr6 (10 HSPs)
chr6 (110-329)||(32196725-32196944)
chr6 (110-269)||(7824105-7824264)
chr6 (113-235)||(11324442-11324564)
chr6 (107-240)||(17292763-17292896)
chr6 (137-256)||(18673363-18673482)
chr6 (152-210)||(9200938-9200996)
chr6 (137-256)||(5667346-5667465)
chr6 (118-236)||(34714895-34715013)
chr6 (137-230)||(2682761-2682854)
chr6 (141-214)||(7155422-7155495)
[»] chr3 (10 HSPs)
chr3 (110-329)||(4740971-4741187)
chr3 (138-235)||(14788867-14788964)
chr3 (110-274)||(13043321-13043485)
chr3 (110-274)||(13051398-13051562)
chr3 (137-249)||(20017410-20017522)
chr3 (140-256)||(47160990-47161106)
chr3 (137-249)||(6894192-6894304)
chr3 (137-230)||(25845647-25845740)
chr3 (176-209)||(33388601-33388634)
chr3 (184-236)||(6925997-6926049)
[»] chr5 (13 HSPs)
chr5 (172-329)||(16610602-16610759)
chr5 (110-329)||(31706337-31706552)
chr5 (142-269)||(29651767-29651894)
chr5 (110-262)||(704490-704642)
chr5 (110-210)||(30722538-30722638)
chr5 (110-262)||(27482646-27482798)
chr5 (165-255)||(29994645-29994735)
chr5 (137-181)||(22922506-22922550)
chr5 (149-255)||(18967864-18967970)
chr5 (137-186)||(22924159-22924208)
chr5 (137-261)||(19314979-19315103)
chr5 (184-236)||(21041995-21042047)
chr5 (149-181)||(22923149-22923181)
[»] chr2 (14 HSPs)
chr2 (176-329)||(8090506-8090659)
chr2 (110-274)||(40638766-40638930)
chr2 (140-255)||(31640241-31640356)
chr2 (110-274)||(20948080-20948244)
chr2 (137-234)||(27708189-27708286)
chr2 (17-66)||(43451281-43451330)
chr2 (137-235)||(44735977-44736075)
chr2 (140-236)||(27009200-27009296)
chr2 (194-267)||(9420722-9420795)
chr2 (143-256)||(45131107-45131220)
chr2 (140-227)||(9840768-9840855)
chr2 (141-243)||(33645830-33645932)
chr2 (149-214)||(21563423-21563488)
chr2 (140-261)||(30505717-30505838)
[»] chr4 (10 HSPs)
chr4 (119-255)||(52577965-52578101)
chr4 (131-230)||(9831377-9831476)
chr4 (110-230)||(30972395-30972515)
chr4 (137-236)||(22653286-22653385)
chr4 (137-230)||(11131194-11131287)
chr4 (184-256)||(19846574-19846646)
chr4 (146-230)||(43001717-43001801)
chr4 (137-227)||(8830949-8831039)
chr4 (140-237)||(25130441-25130538)
chr4 (146-214)||(48336968-48337036)
[»] chr8 (7 HSPs)
chr8 (137-236)||(8462514-8462613)
chr8 (149-214)||(5751992-5752057)
chr8 (146-236)||(33282823-33282913)
chr8 (108-206)||(39435484-39435582)
chr8 (137-230)||(37929106-37929199)
chr8 (170-230)||(33191210-33191270)
chr8 (196-256)||(38738483-38738543)
[»] scaffold0236 (1 HSPs)
scaffold0236 (253-329)||(19937-20009)
[»] scaffold0204 (1 HSPs)
scaffold0204 (146-214)||(24490-24558)


Alignment Details
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 47543398 - 47543617
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||    
T  47543398 tttaatgtcaaagattgttcggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttgaagacgaagtttagttctcttcccttcaatt 47543497  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 309  Q
    |||||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  47543498 atcatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 47543597  T
Q  310 tgttcttgactctgatgtcc 329  Q
    ||||||||||||||||||||    
T  47543598 tgttcttgactctgatgtcc 47543617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 110 - 227
Target Start/End: Complemental strand, 4609769 - 4609652
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||| ||||||| ||| | ||||  |||||||||||||||||||| | |||||||| ||||||||||||| |||||| | ||||||||||| ||||||    
T  4609769 tttaatatcaaagaatgctctgttaatcaggtggtcgataagattaaattgcttgcttatacgtggttgaaggcgaagtatatttctcttcccctcaatt 4609670  T
Q  210 atcatcagtggtggctta 227  Q
    | |||  |||||||||||    
T  4609669 accatgggtggtggctta 4609652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 110 - 265
Target Start/End: Original strand, 10315043 - 10315198
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| ||||| |||||||||  ||||| |   ||||||||| ||||||    
T  10315043 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacatggttgaaggtgaagtattcctctcttcccctcaatt 10315142  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 265  Q
    | ||   |||||||||||| | |||||  ||||| ||||| ||||||| |||||||    
T  10315143 accacgggtggtggcttagcccgtttactattttgggcataggctaagtgtttctt 10315198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 110 - 265
Target Start/End: Complemental strand, 31030496 - 31030341
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||| ||| ||||||  |||||||| || ||||||||||||||||| |||||||||||||||  ||||| |   ||||||||| ||||||    
T  31030496 tttaatgtcaaagaatgctcggttaatcaggtggtagacaagattaagtcgcttgcctttacgtggttgaaggtgaagtattcctctcttcccctcaatt 31030397  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctt 265  Q
    | ||   |||||||||||  | |||||  ||||| ||||| ||||||| |||||||    
T  31030396 accacgggtggtggcttaacccgtttactattttgggcataggctaagtgtttctt 31030341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 17116522 - 17116404
Alignment:
Q  118 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 217  Q
    |||||||||| |||| || || ||||| |||||||||||||| || || |||| |||||||||| |||| | || |||||||||||||| |||||||       
T  17116522 caaagattgctcggtaatacaagtggttgataagattaagtcactcgcatttatgtggttgaaggcgaaatatgcttctcttcccttcagttatcatggt 17116423  T
Q  218 tggtggcttagtctgttta 236  Q
    |||||||||||||||||||    
T  17116422 tggtggcttagtctgttta 17116404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 38153904 - 38154001
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 234  Q
    ||||||||||||| ||||||||| || ||||||| ||||||||||  ||| |||  | |||||||||| || || |||   |||||||||||||||||    
T  38153904 caggtggtcgataggattaagtctctcgcttttaggtggttgaaggtgaaatttcctactcttccctttaactaccatagatggtggcttagtctgtt 38154001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 113 - 329
Target Start/End: Original strand, 32160044 - 32160259
Alignment:
Q  113 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 212  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||| |    
T  32160044 aatgtcaaagattgctcggttatccaggtgatcgataagattaagtcgcttgcttttacgtggttgaggacgaagtttatttctctttccttcaattacc 32160143  T
Q  213 atcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatattgt 312  Q
    ||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||| ||||||||||||||||||    
T  32160144 attggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctg-tttttgtttatgatctcttaggtaacttttgtatatattgt 32160242  T
Q  313 tcttgactctgatgtcc 329  Q
    |||||||||||||||||    
T  32160243 tcttgactctgatgtcc 32160259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 108 - 274
Target Start/End: Original strand, 15259370 - 15259536
Alignment:
Q  108 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 207  Q
    |||||||||||||| | ||  ||||||  ||||||||||| |||||||| |||||||||||||||||||||||| |||||| | ||||||||||| ||||    
T  15259370 tatttaatgtcaaataatgttcggttaatcaggtggtcgacaagattaaatcgcttgcttttacgtggttgaaggcgaagtatatttctcttcccctcaa 15259469  T
Q  208 ttatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 274  Q
    ||| |||  ||||| |||||||| ||||| |||  | ||||| ||||||||||||||||||||||||    
T  15259470 ttaccatgggtggtagcttagtccgtttaccatactgggcataggctaagagtttcttttctgtttt 15259536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 26260768 - 26260869
Alignment:
Q  155 aagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggct 254  Q
    ||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||  ||||||||||||||  |||| ||| || ||||||||||    
T  26260768 aagtctcttgcttttacgtggttgaaggcgaagtttgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgttgggcattggct 26260867  T
Q  255 aa 256  Q
    ||    
T  26260868 aa 26260869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 137 - 241
Target Start/End: Original strand, 27568382 - 27568486
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||| || | ||||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||| |||  |||||||||||||||||||     
T  27568382 caggtggtagaaacgattaagtctcttgcttttacgtggttgaaggcaaaatttgtttctcttcccttcaattaccatgggtggtggcttagtctgtttg 27568481  T
Q  237 tcatt 241  Q
    |||||    
T  27568482 tcatt 27568486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 267
Target Start/End: Complemental strand, 27363855 - 27363725
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    ||||||||||||||||||||||||||||| ||| ||||||||||| ||||||    ||||||| || ||||||| |||  || ||||||||||| |||||    
T  27363855 caggtggtcgataagattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctctttccctcaattaccatgggttgtggcttagtccgttta 27363756  T
Q  237 tcattttaggcattggctaagagtttctttt 267  Q
     |||||| ||||| |||||||  ||||||||    
T  27363755 ccattttgggcataggctaaggttttctttt 27363725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 249
Target Start/End: Original strand, 44675097 - 44675206
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 239  Q
    ||||| |||||||||||| | ||||| || | |||||||||| |||| |||| ||| ||||||||||||||||||   ||||||||||||| ||||||||    
T  44675097 gtggttgataagattaagccacttgcattcatgtggttgaaggcgaaatttgcttcccttcccttcaattatcatggttggtggcttagtccgtttatca 44675196  T
Q  240 ttttaggcat 249  Q
    | || |||||    
T  44675197 tgttgggcat 44675206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 329
Target Start/End: Complemental strand, 1951953 - 1951913
Alignment:
Q  289 ttaggcaacttttgtatatattgttcttgactctgatgtcc 329  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1951953 ttaggcaacttttgtatatattgttcttgactctgatgtcc 1951913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 207
Target Start/End: Complemental strand, 38133163 - 38133069
Alignment:
Q  113 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaa 207  Q
    |||| ||||| |||| ||||||| |||||| | ||||| ||||||||  |||||| ||||||||||||| |||  ||||||| ||||||||||||    
T  38133163 aatgacaaagtttgctcggttattcaggtgatagataacattaagtcttttgcttatacgtggttgaaggcgagatttgtttttcttcccttcaa 38133069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 9484879 - 9484921
Alignment:
Q  172 gtggttgaagacgaagtttgtttctcttcccttcaattatcat 214  Q
    |||||||||| |||| |||||||||||||||||||||||||||    
T  9484879 gtggttgaaggcgaaatttgtttctcttcccttcaattatcat 9484921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 12688172 - 12688276
Alignment:
Q  132 ttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtct 231  Q
    |||| |||||||| ||||||||||||| |||  |||||| ||||||||||  |||||||    |||||||||| || ||||||   |||||||||||||     
T  12688172 ttatgcaggtggtggataagattaagttgctaacttttaagtggttgaaggtgaagtttccaactcttccctttaactatcatggatggtggcttagtcc 12688271  T
Q  232 gttta 236  Q
    |||||    
T  12688272 gttta 12688276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 25392413 - 25392345
Alignment:
Q  146 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 214  Q
    ||||||||||||||||| || | || |||||||||| ||||||||  || | |||||||||||||||||    
T  25392413 gataagattaagtcgctcgcatgtatgtggttgaaggcgaagttttcttattttcccttcaattatcat 25392345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 230
Target Start/End: Original strand, 4889452 - 4889542
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    ||||| ||||| |||||||||||||| || | |||||| ||| |||||||   |||||||||||| || ||||||  |||||| |||||||    
T  4889452 gtggttgataaaattaagtcgcttgcattcatgtggttcaaggcgaagttcccttctcttccctttaactatcatgggtggtgacttagtc 4889542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 224
Target Start/End: Original strand, 27264588 - 27264662
Alignment:
Q  150 agattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggc 224  Q
    |||||||||||||||| ||| ||||||||||| ||||||    |||||||||| ||||||| |||  ||||||||    
T  27264588 agattaagtcgcttgccttttcgtggttgaaggcgaagtactcttctcttcccctcaattaccatgggtggtggc 27264662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 6723811 - 6723718
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    ||||||||||| ||||||||||| ||  |||||| ||||||||||  |||||||  | ||| ||| ||||||| ||||   |||||||||||||    
T  6723811 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggtgaagtttaatactcctcctttcaattttcatggatggtggcttagtc 6723718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 10686285 - 10686232
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagttt 190  Q
    |||||||| |||||||||||||| ||| | ||| ||||||||||| ||||||||    
T  10686285 caggtggtggataagattaagtcccttacatttgcgtggttgaaggcgaagttt 10686232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 236
Target Start/End: Original strand, 48973644 - 48973749
Alignment:
Q  131 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    ||||| |||||||| || || ||||||| | |  |||| | |||||| |||  |||||||||  |||||||||| |||||||||  ||||||||||||||    
T  48973644 gttatacaggtggtggacaaaattaagttgttgactttcaagtggttaaaggtgaagtttgtaactcttccctttaattatcatgggtggtggcttagtc 48973743  T
Q  231 tgttta 236  Q
     |||||    
T  48973744 cgttta 48973749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 261
Target Start/End: Complemental strand, 36098660 - 36098596
Alignment:
Q  197 cttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtt 261  Q
    ||||||||||||||||||   ||||||||||||| ||| | ||| || ||||| |||||||||||    
T  36098660 cttcccttcaattatcatggctggtggcttagtccgttcaccatgttgggcataggctaagagtt 36098596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 156; Significance: 8e-83; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 110 - 329
Target Start/End: Complemental strand, 32196944 - 32196725
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||||||  |||||||||||||||||||  |||||||||||||| ||||||| ||||||||||||||||||  |||||||||||||||||    
T  32196944 tttaatgtcaaagattgttcggttatccaggtggtcgaccagattaagtcgcttacttttacatggttgaagacgaagtttagttctcttcccttcaatt 32196845  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagttaggcaacttttgtatatat 309  Q
    | |||  ||| |||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  32196844 aacatgggtgatggcttagtccgtttaccattttaggcattggctaagagtttcttttctgctttttgtttatgatctgttaggcaacttttgtatatat 32196745  T
Q  310 tgttcttgactctgatgtcc 329  Q
    ||||||||||||||||||||    
T  32196744 tgttcttgactctgatgtcc 32196725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 110 - 269
Target Start/End: Complemental strand, 7824264 - 7824105
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||| ||| ||||||  ||||||||||| ||||||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  7824264 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaagattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 7824165  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttct 269  Q
    | |||  |||||||||||| | ||| | |||||| ||||| ||||||| |||||||||||    
T  7824164 accatgggtggtggcttagcccgttcaccattttgggcataggctaagtgtttcttttct 7824105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 11324442 - 11324564
Alignment:
Q  113 aatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatc 212  Q
    |||| ||||| |||| ||||| | ||| |||| || |||||||||| |||||||||||||||||||||| |||| |||| ||||||||||||||||||||    
T  11324442 aatgacaaagtttgctcggttcttcagatggtagacaagattaagttgcttgcttttacgtggttgaaggcgaaatttgcttctcttcccttcaattatc 11324541  T
Q  213 atcagtggtggcttagtctgttt 235  Q
    ||  |||||||||||||| ||||    
T  11324542 atgggtggtggcttagtccgttt 11324564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 107 - 240
Target Start/End: Complemental strand, 17292896 - 17292763
Alignment:
Q  107 gtatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 206  Q
    |||||||||| |||||| ||  || |||| |||||||||  |||||||||||| || || || | |||||||||  | || |||| ||||||||||||||    
T  17292896 gtatttaatggcaaagaatgatcgattatgcaggtggtcattaagattaagtctctagcattcatgtggttgaacgccaaatttgcttctcttcccttca 17292797  T
Q  207 attatcatcagtggtggcttagtctgtttatcat 240  Q
    ||||||||   || |||||||||| |||||||||    
T  17292796 attatcatggttgatggcttagtccgtttatcat 17292763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 137 - 256
Target Start/End: Original strand, 18673363 - 18673482
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||| ||||| |||||||| ||| |||||| ||||||||||  ||| | |||   ||||||| |||||||||||   ||||||||||| | |||||    
T  18673363 caggtggtggataaaattaagtctcttacttttatgtggttgaaggagaaatatgtcagtcttcccctcaattatcatggttggtggcttagcccgttta 18673462  T
Q  237 tcattttaggcattggctaa 256  Q
      ||||||||||||||||||    
T  18673463 ctattttaggcattggctaa 18673482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 9200996 - 9200938
Alignment:
Q  152 attaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatta 210  Q
    ||||||||||||||||||||||||| |||| |||||| | ||||||||||| |||||||    
T  9200996 attaagtcgcttgcttttacgtggtagaaggcgaagtatatttctcttcccctcaatta 9200938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 256
Target Start/End: Complemental strand, 5667465 - 5667346
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||||||| |||| |  ||||| ||||||||||||||   |||||| |||||| |||||    
T  5667465 caggtggtcgataggattaagttactgactttcaaatggttgaagacgaggtttataactctttccttcaattatcatggttggtggattagtccgttta 5667366  T
Q  237 tcattttaggcattggctaa 256  Q
      ||||||||||| ||||||    
T  5667365 ctattttaggcataggctaa 5667346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 34714895 - 34715013
Alignment:
Q  118 caaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcag 217  Q
    |||||| ||| |||| || || ||||| |||||||||||||| ||  |||||| |||||||||  | || |||  |||||||||| ||||||| |||       
T  34714895 caaagaatgctcggtaatacacgtggttgataagattaagtctctcacttttaggtggttgaaagcaaaatttacttctcttcccatcaattaccatggt 34714994  T
Q  218 tggtggcttagtctgttta 236  Q
    |||||||||||||||||||    
T  34714995 tggtggcttagtctgttta 34715013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 2682761 - 2682854
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    ||||| ||||| ||||||||||| |||||||||| ||||||||||  ||| |||  | || ||| |||||||| ||||   |||||||||||||    
T  2682761 caggttgtcgacaagattaagtcccttgcttttaggtggttgaaggtgaaatttcctactattctcttcaattgtcatggttggtggcttagtc 2682854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Original strand, 7155422 - 7155495
Alignment:
Q  141 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 214  Q
    |||| |||||||||||||  ||| |||||||||||||||||   || |||  |||||| |||||||||||||||    
T  7155422 tggttgataagattaagtttcttacttttacgtggttgaaggaaaaattttcttctctacccttcaattatcat 7155495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 3e-73; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 110 - 329
Target Start/End: Original strand, 4740971 - 4741187
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  4740971 tttaatgtcaaagattgctcggttatctaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtatatttctcttcccttcaatt 4741070  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 308  Q
    | |||  ||| |||||||||| ||||| |||||||||||| ||||||||||||||||||||||||||    ||| || ||| |||||||| |||||||||    
T  4741071 accatgggtgatggcttagtccgtttaccattttaggcataggctaagagtttcttttctgtttttt----atgctctgttcaggcaactattgtatata 4741166  T
Q  309 ttgttcttgactctgatgtcc 329  Q
    |||||||||||||||||||||    
T  4741167 ttgttcttgactctgatgtcc 4741187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 14788867 - 14788964
Alignment:
Q  138 aggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 235  Q
    ||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| |||||| ||| ||||||||||||||| ||||    
T  14788867 aggtggtagataagattaagtcccttgcttttacgtggttgaaggcgaaatttgtttctcttccctccaattaccatgagtggtggcttagtcagttt 14788964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 13043321 - 13043485
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13043321 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13043420  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 274  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13043421 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13043485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 13051398 - 13051562
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||| ||| ||||||  ||||||||||| || |||||||||||||| ||| ||||||||||| |||||| | | ||||||||| |||| |    
T  13051398 tttaatgtcaaagaatgctcggttaatcaggtggtcgacaaaattaagtcgcttgcctttgcgtggttgaaggcgaagtatttctctcttcccctcaact 13051497  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 274  Q
    | |||  |||||||||||  | ||| | |||||| ||||| ||||||||||||||||||| ||||    
T  13051498 accatgggtggtggcttaacccgttcaccattttgggcataggctaagagtttcttttctatttt 13051562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 249
Target Start/End: Complemental strand, 20017522 - 20017410
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||| || ||||||||||| ||||||| |||||||||||||| ||| |||||||| |||||||| || || |||   ||||||||| ||| ||| |    
T  20017522 caggtggtagaaaagattaagtctcttgcttatacgtggttgaagaagaaatttgtttcacttcccttaaactaccatggctggtggctttgtccgttca 20017423  T
Q  237 tcattttaggcat 249  Q
     |||||| |||||    
T  20017422 ccattttgggcat 20017410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 47160990 - 47161106
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 239  Q
    ||||| |||| |||||||| | |  |||||| ||||||||||  |||||||  ||||||||| |||||||| |||   ||||||||||| | ||||||      
T  47160990 gtggtggataggattaagttgttaacttttaagtggttgaaggtgaagtttccttctcttccattcaattaccatggttggtggcttagaccgtttattg 47161089  T
Q  240 ttttaggcattggctaa 256  Q
    |||||||||||||||||    
T  47161090 ttttaggcattggctaa 47161106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 249
Target Start/End: Original strand, 6894192 - 6894304
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    ||||||||||||| ||||||||  ||  |||| |  ||||||||| ||| |||| |  ||||||||||||||||||||   |||||| |||||| |||||    
T  6894192 caggtggtcgataggattaagttactgactttcaaatggttgaaggcgaggtttataactcttcccttcaattatcatggttggtggattagtccgttta 6894291  T
Q  237 tcattttaggcat 249  Q
      |||||||||||    
T  6894292 ctattttaggcat 6894304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 25845647 - 25845740
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    |||||||| ||||| |||||||||||  |||| | |||||||||| ||||||||  |||||| ||||| || || |||   |||||||||||||    
T  25845647 caggtggttgataaaattaagtcgctctctttcatgtggttgaaggcgaagtttccttctctgcccttgaactaccatggttggtggcttagtc 25845740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 33388634 - 33388601
Alignment:
Q  176 ttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||||| |||||||||||||||||    
T  33388634 ttgaagacgaagtttgcttctcttcccttcaatt 33388601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 6925997 - 6926049
Alignment:
Q  184 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  6925997 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 6926049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 1e-69; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 172 - 329
Target Start/End: Original strand, 16610602 - 16610759
Alignment:
Q  172 gtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  16610602 gtggttgaagacgaagtttgtttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaatagtttcttttctgt 16610701  T
Q  272 tttttgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcc 329  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16610702 tttttgtttatgatctgttaggcaacttttgtatatattgttcttgactctgatgtcc 16610759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 110 - 329
Target Start/End: Complemental strand, 31706552 - 31706337
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||||||   |||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||| | ||||||||||| ||||||    
T  31706552 tttaatgtcaaagattgtttggttatccaggtggtcgacaagattaagtcgcttgcttttacgtggttaaaggcgaagtatatttctcttcccctcaatt 31706453  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatata 308  Q
    | |||  |||||||||||||| ||||| ||| || ||||| ||||||||||||||||||||||     |||||| |  ||| |||||||| ||||| |||    
T  31706452 accatgggtggtggcttagtccgtttaccatattgggcataggctaagagtttcttttctgtt-----tttatgctttgttcaggcaactattgtaaata 31706358  T
Q  309 ttgttcttgactctgatgtcc 329  Q
    |||||||||||||||||||||    
T  31706357 ttgttcttgactctgatgtcc 31706337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 142 - 269
Target Start/End: Complemental strand, 29651894 - 29651767
Alignment:
Q  142 ggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcatt 241  Q
    |||||| |||||||||| |||||||||| ||||||||||  ||||||   ||||||||| | |||||||||||  |||||||||||||| ||||| |||     
T  29651894 ggtcgacaagattaagttgcttgctttttcgtggttgaatgcgaagtacttttctcttctcctcaattatcatgggtggtggcttagtccgtttaccatg 29651795  T
Q  242 ttaggcattggctaagagtttcttttct 269  Q
    || ||||| |||||||  ||||||||||    
T  29651794 ttgggcataggctaaggttttcttttct 29651767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 262
Target Start/End: Complemental strand, 704642 - 704490
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    ||||| || ||||||||  ||||||| | |||| | |||||||||||||  ||| ||||| | ||||||||| | ||||||| || |||||| |||||||    
T  704642 tttaacgttaaagattgttcggttattcgggtgatagataagattaagtttcttacttttgcttggttgaaggcaaagtttgcttttcttccattcaatt 704543  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 262  Q
    |||||  |||||| ||||||| ||||| |||  | |||||||||||| |||||    
T  704542 atcatgggtggtgacttagtccgtttaccatactgggcattggctaaaagttt 704490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 110 - 210
Target Start/End: Complemental strand, 30722638 - 30722538
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||| ||| ||||||  |||||||| || || |||||||||||||| ||||||||||||||| |||||| |   ||||||||| ||||||    
T  30722638 tttaatgtcaaagaatgctcggttaatcaggtggtagacaatattaagtcgcttgcctttacgtggttgaaggcgaagtattcctctcttcccctcaatt 30722539  T
Q  210 a 210  Q
    |    
T  30722538 a 30722538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 262
Target Start/End: Complemental strand, 27482798 - 27482646
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||  ||||| ||| |||| || |||||||| |||||||||||||| || || |||  ||||||||||  ||| |  ||| | |||||||||||||    
T  27482798 tttaatgataaagaatgctcggtaattcaggtggttgataagattaagtccctcgccttttggtggttgaaggtgaaatacgttacacttcccttcaatt 27482699  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagttt 262  Q
    |||||   ||||||||||||| ||| | ||| || ||||| ||||||||||||    
T  27482698 atcatggctggtggcttagtccgttcaccatgttgggcataggctaagagttt 27482646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 255
Target Start/End: Original strand, 29994645 - 29994735
Alignment:
Q  165 cttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggcta 255  Q
    |||||| ||||||||||  |||||||  || |||||||||||||||||||   |||||||||| || |||||   ||||||||||||||||    
T  29994645 cttttaagtggttgaaggtgaagtttccttttcttcccttcaattatcatggttggtggcttaatccgtttactgttttaggcattggcta 29994735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 22922550 - 22922506
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaag 181  Q
    |||||||| || ||||||||||| |||||||||||||||||||||    
T  22922550 caggtggtagagaagattaagtctcttgcttttacgtggttgaag 22922506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 255
Target Start/End: Original strand, 18967864 - 18967970
Alignment:
Q  149 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggca 248  Q
    ||||||||||| ||| |||||| |||||||||| |||| |||| ||||||||| || ||| |||||   || ||||||||||  ||||| ||  | ||||    
T  18967864 aagattaagtcactttcttttatgtggttgaaggcgaaatttgcttctcttccatttaatgatcatggatgatggcttagtccatttattatgctgggca 18967963  T
Q  249 ttggcta 255  Q
    |||||||    
T  18967964 ttggcta 18967970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 186
Target Start/End: Complemental strand, 22924208 - 22924159
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaa 186  Q
    |||||||| || ||||||||||| |||| |||||||||||||||| ||||    
T  22924208 caggtggtagagaagattaagtctcttggttttacgtggttgaaggcgaa 22924159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 261
Target Start/End: Complemental strand, 19315103 - 19314979
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||| |||||||||||||| ||  | |||| |||||||||| |||| |||| ||   ||||||  |||||||||   ||||||||||| | |||||    
T  19315103 caggtggttgataagattaagtcactcacatttatgtggttgaaggcgaaatttgctttatttccctggaattatcatggttggtggcttagcccgttta 19315004  T
Q  237 tcattttaggcattggctaagagtt 261  Q
     |||  ||||||| |||||| ||||    
T  19315003 ccatgctaggcataggctaatagtt 19314979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 236
Target Start/End: Original strand, 21041995 - 21042047
Alignment:
Q  184 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||||  |||||||||| |||||||||  |||||||||||||| |||||    
T  21041995 gaagtttgtaactcttccctttaattatcatgggtggtggcttagtccgttta 21042047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 181
Target Start/End: Complemental strand, 22923181 - 22923149
Alignment:
Q  149 aagattaagtcgcttgcttttacgtggttgaag 181  Q
    ||||||||||| |||||||||||||||||||||    
T  22923181 aagattaagtctcttgcttttacgtggttgaag 22923149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 176 - 329
Target Start/End: Original strand, 8090506 - 8090659
Alignment:
Q  176 ttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgttttt 275  Q
    ||||||||| ||||| |||||||||||||||||||||||  |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  8090506 ttgaagacggagtttatttctcttcccttcaattatcatgggtggtggcttagtccgtttaccattttaggcattggctaagagtttcttttctgttttt 8090605  T
Q  276 tgtttatgatcagttaggcaacttttgtatatattgttcttgactctgatgtcc 329  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||    
T  8090606 tgtttatgatctgttaggcaacttttgtatatattgttcttaactctgatgtcc 8090659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 110 - 274
Target Start/End: Complemental strand, 40638930 - 40638766
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    |||||||||||||| ||| | ||||  ||||||||||| |||||||| |||||| | ||||||||||||| |  ||||| || |||||||||||||||||    
T  40638930 tttaatgtcaaagagtgctcagttaatcaggtggtcgacaagattaaatcgcttacctttacgtggttgatgttgaagtatgcttctcttcccttcaatt 40638831  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 274  Q
    | |||  |||||||||||||| |||||  ||||| | ||| |||||| |||||||||| ||||||    
T  40638830 accatgggtggtggcttagtccgtttacgattttggacataggctaaaagtttcttttatgtttt 40638766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 140 - 255
Target Start/End: Original strand, 31640241 - 31640356
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 239  Q
    ||||| |||||||||||||| ||||||||||||||||||||| |||| |||| |||||||||| ||||||| |||   ||||||||||||| |||||  |    
T  31640241 gtggtagataagattaagtcacttgcttttacgtggttgaaggcgaaatttgcttctcttcccctcaattaccatggatggtggcttagtccgtttacaa 31640340  T
Q  240 ttttaggcattggcta 255  Q
    || ||||||| |||||    
T  31640341 ttataggcataggcta 31640356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 110 - 274
Target Start/End: Original strand, 20948080 - 20948244
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    ||||||| |||||| ||| |||||   ||||||||| | ||||||||||||||||| ||| ||||||||||| |||||| |  |||||||| | ||||||    
T  20948080 tttaatgccaaagactgctcggtttctcaggtggtcaacaagattaagtcgcttgccttttcgtggttgaaggcgaagtattcttctcttcgcctcaatt 20948179  T
Q  210 atcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttcttttctgtttt 274  Q
    | |||  |||||||||||||| ||||| ||| || ||  | |||||||  |||||||||| ||||    
T  20948180 accatgggtggtggcttagtccgtttaccatgttgggtgtaggctaaggttttcttttctttttt 20948244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 27708286 - 27708189
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtt 234  Q
    |||||||| ||||||||||||||||| |||||||||||||| ||| |||| |||| | ||||||||||||||  ||||   |||||||||| ||||||    
T  27708286 caggtggttgataagattaagtcgctcgcttttacgtggttaaaggcgaaatttgctactcttcccttcaatcttcatggttggtggcttaatctgtt 27708189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 43451281 - 43451330
Alignment:
Q  17 catcatcctacaagtgcgtaccacacgcttccactaattcaaatgcacac 66  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  43451281 catcatcctacaagtgcgcaccacacgcttccactaattcaaatgcacac 43451330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 44736075 - 44735977
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttt 235  Q
    ||||||||||| ||||||||||| ||  |||||| |||||||||| ||||||||  | ||||||||||||||| ||||   | ||||||||||||||||    
T  44736075 caggtggtcgacaagattaagtccctcacttttatgtggttgaaggcgaagtttaatactcttcccttcaattttcatggttagtggcttagtctgttt 44735977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 140 - 236
Target Start/End: Original strand, 27009200 - 27009296
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    ||||| |||||||||||||| || ||||||| ||| |||||| |||| |||  |||||||||||||||||| |||   ||||||||||||| |||||    
T  27009200 gtggttgataagattaagtctctcgcttttaggtgattgaaggcgaaatttacttctcttcccttcaattaccatggttggtggcttagtccgttta 27009296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 194 - 267
Target Start/End: Complemental strand, 9420795 - 9420722
Alignment:
Q  194 tctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaagagtttctttt 267  Q
    ||||||||| |||||||||||  |||||||||||| | |||||  ||||||||||| |||||||  ||||||||    
T  9420795 tctcttcccctcaattatcatgggtggtggcttagcccgtttactattttaggcataggctaaggttttctttt 9420722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 143 - 256
Target Start/End: Complemental strand, 45131220 - 45131107
Alignment:
Q  143 gtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattt 242  Q
    ||||| ||||||| |||||   |||| | ||||||||||  ||| | || ||||||||||||||||||||||  ||||||||||||||  |||| |||      
T  45131220 gtcgacaagattatgtcgcaaactttcatgtggttgaaggggaaatatgcttctcttcccttcaattatcatgggtggtggcttagtccatttaccatgc 45131121  T
Q  243 taggcattggctaa 256  Q
    | ||||||||||||    
T  45131120 tgggcattggctaa 45131107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 227
Target Start/End: Original strand, 9840768 - 9840855
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 227  Q
    ||||| ||||||||||| ||||| ||||||| ||| |||||| | || |||| | ||||||| ||||||||||||   ||||||||||    
T  9840768 gtggttgataagattaaatcgctcgcttttatgtgattgaaggcaaaatttgctactcttccattcaattatcatggttggtggctta 9840855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 33645932 - 33645830
Alignment:
Q  141 tggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcat 240  Q
    |||| ||||||||||||||||| || |||| ||||||||||   || |||| | ||||||| |||||||| |||   |||||| |||||||||| | |||    
T  33645932 tggttgataagattaagtcgctcgcatttaggtggttgaaggaaaaatttgctactcttcctttcaattaccatggttggtgggttagtctgttcaccat 33645833  T
Q  241 ttt 243  Q
    |||    
T  33645832 ttt 33645830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 21563423 - 21563488
Alignment:
Q  149 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 214  Q
    ||||||||||| ||| ||||||||||||||| | | || |||||||||||| | || |||||||||    
T  21563423 aagattaagtcactttcttttacgtggttgagggcaaaatttgtttctctttcattaaattatcat 21563488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 30505717 - 30505838
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatca 239  Q
    ||||| |||||||||||||  || || ||||  | |||||||  ||| |||  ||| ||||||||||||||||||   |||||| |||||||||||| ||    
T  30505717 gtggttgataagattaagtttctcgcatttatctagttgaaggagaaattttcttcacttcccttcaattatcatggttggtggtttagtctgtttacca 30505816  T
Q  240 ttttaggcattggctaagagtt 261  Q
    | || ||||| |||||| ||||    
T  30505817 tgttgggcataggctaatagtt 30505838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 119 - 255
Target Start/End: Original strand, 52577965 - 52578101
Alignment:
Q  119 aaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagt 218  Q
    |||| |||| ||||| | |||||| | |||||||||||||| |||||||||||||||||||||  ||||||||| |||||||||||||||||||||   |    
T  52577965 aaagtttgctcggttcttcaggtgatagataagattaagtcccttgcttttacgtggttgaaggtgaagtttgtatctcttcccttcaattatcatggtt 52578064  T
Q  219 ggtggcttagtctgtttatcattttaggcattggcta 255  Q
    |||||||||||  ||||  |||| ||||||| |||||    
T  52578065 ggtggcttagtgcgtttgccattctaggcataggcta 52578101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 9831377 - 9831476
Alignment:
Q  131 gttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    ||||| |||||||| |||||||| ||||| |||||||||| |||||||||| |||| || ||| | ||||||||||||||||||   |||||||||||||    
T  9831377 gttattcaggtggtggataagatcaagtctcttgcttttaggtggttgaaggcgaaattcgttacacttcccttcaattatcatggctggtggcttagtc 9831476  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 110 - 230
Target Start/End: Complemental strand, 30972515 - 30972395
Alignment:
Q  110 tttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaatt 209  Q
    ||||||| |||||| ||| |  |||| |||||||| ||||| |||||||||||  |||| | |||| ||||| |||| |||  ||||||||||||||| |    
T  30972515 tttaatggcaaagagtgctcaattatgcaggtggttgataaaattaagtcgctgactttcatgtggctgaaggcgaaatttccttctcttcccttcaact 30972416  T
Q  210 atcatcagtggtggcttagtc 230  Q
    |||||   |||||||||||||    
T  30972415 atcatggctggtggcttagtc 30972395  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 22653286 - 22653385
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||| ||||||||||| |||||  | |||| |||||||||| |||| |||| ||   || ||||||||||||||   |||||||||||||||||||    
T  22653286 caggtggttgataagattaaatcgctcacatttatgtggttgaaggcgaaatttgcttacattaccttcaattatcatggttggtggcttagtctgttta 22653385  T

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Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 11131287 - 11131194
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    |||||||| |||| |||||||| |||  |||||  ||||||||||  |||||||||  |||||||||| |||||||||   |||||||||||||    
T  11131287 caggtggtagataggattaagttgctatcttttcagtggttgaaggtgaagtttgtcactcttccctttaattatcatggttggtggcttagtc 11131194  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 256
Target Start/End: Original strand, 19846574 - 19846646
Alignment:
Q  184 gaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 256  Q
    ||||| || ||||||||||||||||||||||  ||||||| |||||| ||||| ||| || ||||||| ||||    
T  19846574 gaagtatgcttctcttcccttcaattatcatgggtggtggattagtccgtttaccatgttgggcattgtctaa 19846646  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 43001717 - 43001801
Alignment:
Q  146 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    |||||||||||||| ||  | |||| |||||||||| ||||||||  | ||||||  ||||||||||||  ||||||||||||||    
T  43001717 gataagattaagtcactaacatttatgtggttgaaggcgaagtttactactcttcatttcaattatcatatgtggtggcttagtc 43001801  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 227
Target Start/End: Complemental strand, 8831039 - 8830949
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggctta 227  Q
    |||||||| || || |||||||||||  |||||| || |||||||  ||| ||| ||| ||||||||||||||| ||| | ||||||||||    
T  8831039 caggtggttgacaaaattaagtcgctcacttttatgtagttgaaggagaaatttctttatcttcccttcaattaccatgactggtggctta 8830949  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 25130538 - 25130441
Alignment:
Q  140 gtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgtttat 237  Q
    |||||||||||||| ||||| || ||||| | ||||||||||  ||| |||| | ||||| || |||| ||||||   ||||||||||||| ||||||    
T  25130538 gtggtcgataagatcaagtccctcgctttcatgtggttgaaggagaaatttgctactctttccctcaactatcatggttggtggcttagtccgtttat 25130441  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 48336968 - 48337036
Alignment:
Q  146 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 214  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  48336968 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 48337036  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 8462613 - 8462514
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    |||||||| |||||||||||||| ||  | || | |||||||||| |||| |||| ||||||||||||||||||||||   |||||||||||||||||||    
T  8462613 caggtggttgataagattaagtcactcacattcatgtggttgaaggcgaaatttgcttctcttcccttcaattatcatggttggtggcttagtctgttta 8462514  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 214
Target Start/End: Original strand, 5751992 - 5752057
Alignment:
Q  149 aagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 214  Q
    ||||||||||||||||  ||||||||||||||| |||||| |   ||||||||| |||||||||||    
T  5751992 aagattaagtcgcttgtctttacgtggttgaaggcgaagtattcctctcttcccctcaattatcat 5752057  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 236
Target Start/End: Original strand, 33282823 - 33282913
Alignment:
Q  146 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtctgttta 236  Q
    ||||| |||||||||||| |||||| ||||||||||   || |||| |||||| ||  |||||||||||   ||||||||||||| |||||    
T  33282823 gataaaattaagtcgcttacttttaggtggttgaaggaaaaatttgcttctctccctctcaattatcatggttggtggcttagtccgttta 33282913  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 206
Target Start/End: Complemental strand, 39435582 - 39435484
Alignment:
Q  108 tatttaatgtcaaagattgcccggttatccaggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttca 206  Q
    |||| |||| |||||| ||| ||||| | |||||||| |||||||||||||| || |  || | |||||||||| |||| |||| ||||||||| ||||    
T  39435582 tattcaatgacaaagaatgctcggttttgcaggtggttgataagattaagtcactcgagttcatgtggttgaaggcgaaatttgcttctcttcctttca 39435484  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 230
Target Start/End: Original strand, 37929106 - 37929199
Alignment:
Q  137 caggtggtcgataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    ||||||||||||| ||||||||| || || |||| ||||||||||  ||| |||  | |||||||||| || ||||||   |||||||||||||    
T  37929106 caggtggtcgataggattaagtctctcgcatttaggtggttgaaggtgaaatttcctactcttccctttaactatcatggttggtggcttagtc 37929199  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 33191270 - 33191210
Alignment:
Q  170 acgtggttgaagacgaagtttgtttctcttcccttcaattatcatcagtggtggcttagtc 230  Q
    ||||||||||||  ||| |||| | ||||||||||||||||||||   |||||||||||||    
T  33191270 acgtggttgaagttgaaatttgatactcttcccttcaattatcatggttggtggcttagtc 33191210  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 256
Target Start/End: Original strand, 38738483 - 38738543
Alignment:
Q  196 tcttcccttcaattatcatcagtggtggcttagtctgtttatcattttaggcattggctaa 256  Q
    ||||||| |||||||||||   ||||||||||| | |||||  ||||||||||||||||||    
T  38738483 tcttcccctcaattatcatggttggtggcttagcccgtttactattttaggcattggctaa 38738543  T

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Target: scaffold0236 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 20009 - 19937
Alignment:
Q  253 ctaagagtttcttttctgttttttgtttatgatcagtt-aggcaacttttgtatatattgttcttgactctgatgtcc 329  Q
    |||||||||||||||||||||||     ||| || ||| |||||||| ||||| ||||||||||||||||||||||||    
T  20009 ctaagagtttcttttctgttttt-----atgctctgttcaggcaactattgtaaatattgttcttgactctgatgtcc 19937  T

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Target: scaffold0204 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 24490 - 24558
Alignment:
Q  146 gataagattaagtcgcttgcttttacgtggttgaagacgaagtttgtttctcttcccttcaattatcat 214  Q
    ||||| |||||||||||  |||| | |||||||||| |||| |||  |||||||||||||||| |||||    
T  24490 gataaaattaagtcgctaactttcatgtggttgaaggcgaaatttccttctcttcccttcaatcatcat 24558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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