View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_68 (Length: 335)

Name: NF8905A_low_68
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_68
NF8905A_low_68
[»] chr8 (5 HSPs)
chr8 (1-328)||(24788360-24788687)
chr8 (9-265)||(38245904-38246160)
chr8 (65-108)||(38921194-38921237)
chr8 (202-270)||(34180960-34181028)
chr8 (172-228)||(36481465-36481521)
[»] chr2 (6 HSPs)
chr2 (20-245)||(38624051-38624274)
chr2 (57-257)||(5539796-5539996)
chr2 (65-234)||(36400387-36400556)
chr2 (185-270)||(40368314-40368399)
chr2 (65-219)||(15916391-15916544)
chr2 (146-247)||(7447088-7447189)
[»] chr6 (10 HSPs)
chr6 (23-265)||(29071256-29071498)
chr6 (23-265)||(29103829-29104071)
chr6 (101-265)||(19229348-19229514)
chr6 (9-254)||(18780623-18780868)
chr6 (39-106)||(19230121-19230188)
chr6 (65-234)||(3296884-3297053)
chr6 (65-106)||(24395702-24395743)
chr6 (65-106)||(18970902-18970943)
chr6 (56-96)||(9856416-9856456)
chr6 (65-105)||(21605321-21605361)
[»] chr5 (2 HSPs)
chr5 (56-270)||(25352450-25352664)
chr5 (59-217)||(16160223-16160381)
[»] chr1 (13 HSPs)
chr1 (22-255)||(14207232-14207465)
chr1 (125-253)||(41159443-41159571)
chr1 (55-120)||(33568653-33568718)
chr1 (56-156)||(31403955-31404055)
chr1 (172-228)||(38158249-38158305)
chr1 (53-120)||(46269208-46269275)
chr1 (191-276)||(23756778-23756863)
chr1 (185-270)||(47671316-47671401)
chr1 (53-108)||(48242237-48242292)
chr1 (65-111)||(22157822-22157868)
chr1 (191-240)||(6043684-6043733)
chr1 (146-258)||(81533-81645)
chr1 (172-228)||(45813902-45813958)
[»] chr7 (11 HSPs)
chr7 (56-256)||(13807878-13808078)
chr7 (20-199)||(13760835-13761013)
chr7 (53-120)||(43883964-43884031)
chr7 (173-257)||(19480659-19480743)
chr7 (56-120)||(1718297-1718361)
chr7 (50-270)||(6802788-6803008)
chr7 (142-270)||(29802594-29802722)
chr7 (56-96)||(49146368-49146408)
chr7 (65-110)||(9598592-9598637)
chr7 (65-110)||(9826163-9826208)
chr7 (145-230)||(26159689-26159774)
[»] chr3 (9 HSPs)
chr3 (50-230)||(3159566-3159746)
chr3 (50-270)||(38394746-38394966)
chr3 (53-120)||(43858280-43858347)
chr3 (14-108)||(47746376-47746470)
chr3 (65-108)||(10927136-10927179)
chr3 (65-110)||(53505588-53505633)
chr3 (176-228)||(41226543-41226595)
chr3 (78-120)||(11874398-11874440)
chr3 (65-111)||(15206043-15206089)
[»] chr4 (8 HSPs)
chr4 (145-230)||(18992050-18992132)
chr4 (81-270)||(48489116-48489305)
chr4 (50-270)||(12376823-12377043)
chr4 (53-108)||(53480776-53480831)
chr4 (144-230)||(41147925-41148011)
chr4 (63-201)||(3693116-3693251)
chr4 (81-255)||(11581185-11581359)
chr4 (172-228)||(2473527-2473583)
[»] scaffold0259 (1 HSPs)
scaffold0259 (65-217)||(4076-4228)
[»] scaffold0011 (1 HSPs)
scaffold0011 (50-129)||(218174-218253)
[»] scaffold0074 (1 HSPs)
scaffold0074 (65-106)||(25786-25827)


Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 24788687 - 24788360
Alignment:
Q  1 tcattatcctcaattcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24788687 tcattatcctcaattcaccaagatggcgggcatgccgttattttcacacttatttttcaggattatttggtttgcaactgtttgggtgatttggaaggag 24788588  T
Q  101 aggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtgg 200  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||      
T  24788587 aggaataactgaatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaattcattcttatggttgaaatcgaaacaggtaa 24788488  T
Q  201 cttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaattttattcttcagcctttggctagtgctttttgc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||| |||  |||||||||||||||||||     
T  24788487 cttttgtttatagttaccacgactggtggagacaacccattctttgtatggttgttcttatgtaatttttattcctcaatctttggctagtgctttttgt 24788388  T
Q  301 agtaccttgactgtgtaaatattcttcg 328  Q
    || ||||| |||||||||||||| ||||    
T  24788387 agcaccttaactgtgtaaatatttttcg 24788360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 9 - 265
Target Start/End: Complemental strand, 38246160 - 38245904
Alignment:
Q  9 ctcaattcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 108  Q
    |||| ||||| |||||||  ||||||||| ||||| |||| ||||| |||| |||||||||||||||||||  |||||||||||||||||||| ||| ||    
T  38246160 ctcagttcactaagatggttggcatgccgatattttcacatttattcttcaagattatttggtttgcaattaattgggtgatttggaaggagaagaacaa 38246061  T
Q  109 ccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtt 208  Q
    |  ||| ||||| ||||||||  | ||||| |||||||||||||||||||||||||| |||| ||| |||||||||||||| ||||  |||||||||| |    
T  38246060 ctagatatttcaaaacacggtacccactccttttactctcattgaaaaagtaaagttcaattcattattatggttgaaatcaaaactagtggcttttgct 38245961  T
Q  209 tatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaa 265  Q
    |||||||| || ||| |||||| ||| | |||||||||  ||||||||||| |||||    
T  38245960 tatagttatcatgaccggtggaaacaccacattctttgcatgggtgttcttctgtaa 38245904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 108
Target Start/End: Complemental strand, 38921237 - 38921194
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataa 108  Q
    ||||||||||||| ||||||||| ||||||||||||||||||||    
T  38921237 atttggtttgcaactgtttgggtcatttggaaggagaggaataa 38921194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 202 - 270
Target Start/End: Complemental strand, 34181028 - 34180960
Alignment:
Q  202 ttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 270  Q
    ||||||||||  ||| ||||| ||||||| ||| ||  |||||||| ||||||||||||||||| ||||    
T  34181028 ttttgtttattcttatcacgattggtggaaacaccctgttctttgtatgggtgttcttatgtaattttt 34180960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 36481465 - 36481521
Alignment:
Q  172 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 228  Q
    |||||||||||| ||| | ||||||||   ||||| |||||||||||||||||||||    
T  36481465 attcttatggttaaaaactaaacaggttaattttgcttatagttaccacgactggtg 36481521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 1e-53; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 20 - 245
Target Start/End: Original strand, 38624051 - 38624274
Alignment:
Q  20 aagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttc 119  Q
    ||||||||||||||||| |||||| |||| |||||||||||||||||||| ||||||| | ||||| ||||||||||||||| |||  ||| ||| ||||    
T  38624051 aagatggcgggcatgccattattttcacatttatttttcaggattatttgctttgcaactatttggatgatttggaaggagatgaa--accagatatttc 38624148  T
Q  120 ataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttacca 219  Q
    | || ||| | || ||| |||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |||||| ||| |||||||||||     
T  38624149 aaaatacgatatccacttcctttactctcattgaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtggctcttgcttatagttaccg 38624248  T
Q  220 cgactggtggagacaacccattcttt 245  Q
     ||||||||  |||| ||||||||||    
T  38624249 ggactggtgacgacaccccattcttt 38624274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 257
Target Start/End: Original strand, 5539796 - 5539996
Alignment:
Q  57 tcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaa 156  Q
    ||||||| |||||||||||    ||||||||||| ||||| || | ||||||| |  | ||||| || |||||||||| ||| | || ||||||||||||    
T  5539796 tcaggataatttggtttgcttccgtttgggtgatatggaaagaaaagaataactgtgtctttcaaaatacggtttctaatccttctattctcattgaaaa 5539895  T
Q  157 agtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgtt 256  Q
    ||| |||   ||||||||||| ||||||||||| ||||||||| | |||   |||| ||| || |||||||||| ||| ||  |||||||| ||| ||||    
T  5539896 agttaagccaaatttattcttgtggttgaaatcaaaacaggtgtcctttagctataattatcatgactggtggaaacatccgcttctttgtatggatgtt 5539995  T
Q  257 c 257  Q
    |    
T  5539996 c 5539996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 36400556 - 36400387
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 164  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| ||  | || || || ||| | || | ||| |  |  |||| ||| ||||| |||     
T  36400556 atttggtttgcaactgtttgggtgatatggaaggagaggaataatcgtgtattccaaaatacgatatccaatccttcaatactcactgagaaagtcaagc 36400457  T
Q  165 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagaca 234  Q
    | ||||  ||||||||| ||||||| ||||||||||| || | ||||| |||||||||||| ||||||||    
T  36400456 taaattccttcttatggctgaaatctaaacaggtggccttagcttatacttaccacgactgatggagaca 36400387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 270
Target Start/End: Complemental strand, 40368399 - 40368314
Alignment:
Q  185 aaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 270  Q
    ||||| |||||||||| ||||||||||  ||||||||| ||||||| ||| ||  || ||||| ||||||||||||||||| ||||    
T  40368399 aaatctaaacaggtggattttgtttattcttaccacgattggtggaaacaccctgttttttgtatgggtgttcttatgtaattttt 40368314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 219
Target Start/End: Original strand, 15916391 - 15916544
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 164  Q
    ||||| ||||||| | |||||||||||| |||||| | ||| || ||  | ||||| ||  |||| || ||||| |||| ||||||| ||||||| ||||    
T  15916391 atttgatttgcaactctttgggtgatttagaaggaaatgaacaatcgtgtatttcaaaatgcggtgtccactccttttattctcattaaaaaagttaagt 15916490  T
Q  165 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttacca 219  Q
    | ||| | ||||||||||||||||| ||||||  ||| |||| ||||| ||||||    
T  15916491 ttaatct-ttcttatggttgaaatctaaacagacggcctttggttataattacca 15916544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 247
Target Start/End: Complemental strand, 7447189 - 7447088
Alignment:
Q  146 ctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattcttt 245  Q
    |||||||||||||| ||| || |||  ||| | ||||||||||| ||| || ||||||||| ||||  ||||||||| ||||||| ||| || |||||||    
T  7447189 ctcattgaaaaagtgaagctgcattccttcctttggttgaaatctaaatagatggcttttgcttattcttaccacgaatggtggaaacacccaattcttt 7447090  T
Q  246 gt 247  Q
    ||    
T  7447089 gt 7447088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 83; Significance: 3e-39; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 29071498 - 29071256
Alignment:
Q  23 atggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcata 122  Q
    |||||||| |||||||| | | | || | ||| |||||||||||||| ||||| | | |||||||| |||||||||| |||||||||| | |||| || |    
T  29071498 atggcgggtatgccgttctctactcaatcattcttcaggattatttgatttgccactatttgggtgctttggaaggaaaggaataaccaggttttccaaa 29071399  T
Q  123 acacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacga 222  Q
    | ||| ||||  |||| |||||||||||||||||||| ||  |  |||||||| | |||||||||||||||||||||||||||||||||| ||| |||||    
T  29071398 atacgatttcatctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacga 29071299  T
Q  223 ctggtggagacaacccattctttgtttgggtgttcttatgtaa 265  Q
     ||||||| ||| ||||||| |||| ||| |||| | ||||||    
T  29071298 ttggtggaaacaccccattcattgtatggatgttatcatgtaa 29071256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 29104071 - 29103829
Alignment:
Q  23 atggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcata 122  Q
    |||||||| |||||||| | | | || | ||| |||||||||||||| ||||| | | |||||||| |||||||||| |||||||||| | |||| || |    
T  29104071 atggcgggtatgccgttctctactcaatcattcttcaggattatttgatttgccactatttgggtgctttggaaggaaaggaataaccaggttttccaaa 29103972  T
Q  123 acacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacga 222  Q
    | ||| ||||  |||| |||||||||||||||||||| ||  |  |||||||| | |||||||||||||||||||||||||||||||||| ||| |||||    
T  29103971 atacgatttcatctccttttactctcattgaaaaagttaaactccatttattcctttggttgaaatcgaaacaggtggcttttgtttatacttatcacga 29103872  T
Q  223 ctggtggagacaacccattctttgtttgggtgttcttatgtaa 265  Q
     ||||||| ||| ||||||| |||| ||| |||| | ||||||    
T  29103871 ttggtggaaacaccccattcattgtatggatgttatcatgtaa 29103829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 101 - 265
Target Start/End: Complemental strand, 19229514 - 19229348
Alignment:
Q  101 aggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtgg 200  Q
    ||||| |||||||| ||||| || ||||| || ||||| || |||||| || ||||||||||||| |||| |||||||||||||||||| ||||| ||||    
T  19229514 aggaacaaccggatatttcaaaatacggtatccactcctttcactctcgttaaaaaagtaaagttcaattcattcttatggttgaaatcaaaacaagtgg 19229415  T
Q  201 cttttgtttatagttaccacgactggtggagacaacccattctttgtttgg--gtgttcttatgtaa 265  Q
    |||||| |||||||||||||||| |||| | ||| |||||| ||| | |||  ||||||||||||||    
T  19229414 cttttgcttatagttaccacgaccggtgaaaacaccccattttttatatgggtgtgttcttatgtaa 19229348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 254
Target Start/End: Complemental strand, 18780868 - 18780623
Alignment:
Q  9 ctcaattcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 108  Q
    |||| ||||| |||||||||||||||||    | | | || |||||||||| |||||||||||||| || | |||||||| |||||||||| |||| |||    
T  18780868 ctcagttcactaagatggcgggcatgccaacctattctcatttatttttcaagattatttggtttgtaaatatttgggtgctttggaaggataggattaa 18780769  T
Q  109 ccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtt 208  Q
     ||| | ||||| || | || |||| | | |||| |||||||||||||||| ||| |  |||  ||| | ||| ||||||| |||||| |||||||||      
T  18780768 tcgggtatttcaaaatatggcttcttcacacttttctctcattgaaaaagtgaagctccattccttcctttggctgaaatctaaacagatggcttttgcc 18780669  T
Q  209 tatagttaccacgactggtggagacaacccattctttgtttgggtg 254  Q
    |||| ||||||||| ||||||| ||| || ||||||||| ||||||    
T  18780668 tatacttaccacgattggtggaaacacccaattctttgtatgggtg 18780623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 39 - 106
Target Start/End: Complemental strand, 19230188 - 19230121
Alignment:
Q  39 tatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaat 106  Q
    ||||| |||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||    
T  19230188 tattttcacatttattcttcagaattatttggtttgcaagtgtttgggtgatttggaaggagatgaat 19230121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 234
Target Start/End: Complemental strand, 3297053 - 3296884
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 164  Q
    ||||||||||||| |||||||||||| ||||||||| ||||||| ||  | || || || ||| | || | ||| |  |  |||||||| ||||| |||     
T  3297053 atttggtttgcaactgtttgggtgatatggaaggagcggaataatcgtgtcttccaaaatacgatatccaatccttcaatactcattgagaaagtcaagc 3296954  T
Q  165 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagaca 234  Q
    | |||| |||||||||| ||||||| ||||| ||||| || | ||||| |||||| || |||||||||||    
T  3296953 taaattcattcttatggctgaaatctaaacatgtggccttagcttatacttaccatgattggtggagaca 3296884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 24395702 - 24395743
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaat 106  Q
    ||||||||||||| ||||||||||||||||||||| ||||||    
T  24395702 atttggtttgcaactgtttgggtgatttggaaggaaaggaat 24395743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 18970943 - 18970902
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaat 106  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||    
T  18970943 atttggtttgcaactgtttaggtgatttggaaggaaaggaat 18970902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 9856456 - 9856416
Alignment:
Q  56 ttcaggattatttggtttgcaattgtttgggtgatttggaa 96  Q
    |||||||||||||||||||||  ||| ||||||||||||||    
T  9856456 ttcaggattatttggtttgcagctgtctgggtgatttggaa 9856416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 21605361 - 21605321
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaa 105  Q
    ||||||||||||  ||||||||||||||||||||| |||||    
T  21605361 atttggtttgcatctgtttgggtgatttggaaggaaaggaa 21605321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 270
Target Start/End: Complemental strand, 25352664 - 25352450
Alignment:
Q  56 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaa 155  Q
    |||||||| ||||||||||||||| |||||||| |||||||||  |||||| | ||||||||||| || | | ||||  |||| ||||||||||||||||    
T  25352664 ttcaggataatttggtttgcaattatttgggtgctttggaagggaaggaatgatcggatttttcaaaatatgatttcatctccttttactctcattgaaa 25352565  T
Q  156 aagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgt 255  Q
    |||| |  ||  ||| |||| | ||||||||||||||| ||||||||||| |||||| | || || |  |||||| ||| ||||||  |||| |||||||    
T  25352564 aagttagatttcattcattcctttggttgaaatcgaaataggtggcttttatttatactcacaacaagaggtggaaacaccccatttattgtatgggtgt 25352465  T
Q  256 tcttatgtaaatttt 270  Q
      |||||||| ||||    
T  25352464 gattatgtaattttt 25352450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 217
Target Start/End: Original strand, 16160223 - 16160381
Alignment:
Q  59 aggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaag 158  Q
    ||||| ||||||||||||| |||||||||||||||||| || | ||| |||||  | ||||| || || || || ||||| |||| ||||||||| |||     
T  16160223 aggataatttggtttgcaactgtttgggtgatttggaaagaaatgaacaaccgtgtatttcaaaatacagtgtccactccttttattctcattgataaaa 16160322  T
Q  159 taaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttac 217  Q
    | ||| |  ||  |||||||||| ||||||| ||||||||||| ||||  |||||||||    
T  16160323 ttaagcttcatccattcttatggctgaaatccaaacaggtggcctttgcctatagttac 16160381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 22 - 255
Target Start/End: Original strand, 14207232 - 14207465
Alignment:
Q  22 gatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcat 121  Q
    ||||||||| |||||  ||| | |||| ||||| |||||||||||||||||||  | | ||||||||  || |||||| ||||| |||| | |||||||     
T  14207232 gatggcgggaatgccaatatcttcacatttattcttcaggattatttggtttgttaatatttgggtgccttagaaggaaaggaacaaccaggtttttcaa 14207331  T
Q  122 aacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacg 221  Q
    || |||| ||||||| | |||  |||||||||||||||||||||  |||  ||||| ||||||||||| ||||||| |||||||| ||| | ||| ||||    
T  14207332 aatacgggttctacttcttttgttctcattgaaaaagtaaagtttcattccttcttttggttgaaatctaaacaggcggcttttgcttacacttatcacg 14207431  T
Q  222 actggtggagacaacccattctttgtttgggtgt 255  Q
    || |||||| |||  |||| | |||| |||||||    
T  14207432 accggtggaaacactccatcccttgtatgggtgt 14207465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 125 - 253
Target Start/End: Original strand, 41159443 - 41159571
Alignment:
Q  125 acggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgact 224  Q
    ||||||||||||| ||| | |||| |||||||||| ||| |  |||  ||| | ||| ||||||| ||||| ||| |||||| ||||| ||||||||| |    
T  41159443 acggtttctactcacttcattctctttgaaaaagtgaagcttcattctttcctttggctgaaatctaaacatgtgacttttgcttataattaccacgatt 41159542  T
Q  225 ggtggagacaacccattctttgtttgggt 253  Q
    |||||| ||| |||||||||||| |||||    
T  41159543 ggtggaaacaccccattctttgtatgggt 41159571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 33568718 - 33568653
Alignment:
Q  55 tttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 120  Q
    ||||||||||||||||||||| |  |||||||| ||||||||||| ||||||||||| || |||||    
T  33568718 tttcaggattatttggtttgccacagtttgggtcatttggaaggataggaataaccgaatatttca 33568653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 56 - 156
Target Start/End: Original strand, 31403955 - 31404055
Alignment:
Q  56 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaa 155  Q
    |||||||| |||||||||||||  |||||| ||||||||||||| |||||||||||  | || || |  ||||| |||| ||| |||||||| |||||||    
T  31403955 ttcaggataatttggtttgcaaccgtttggatgatttggaaggataggaataaccgcgtattccaaactacggtatctaatccttttactctaattgaaa 31404054  T
Q  156 a 156  Q
    |    
T  31404055 a 31404055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 228
Target Start/End: Original strand, 38158249 - 38158305
Alignment:
Q  172 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 228  Q
    |||||||||||||||| | ||||||||   |||||||||||||||||||||||||||    
T  38158249 attcttatggttgaaaactaaacaggttaattttgtttatagttaccacgactggtg 38158305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 46269275 - 46269208
Alignment:
Q  53 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 120  Q
    ||||||||| ||||||||||| | | | ||||||||||||||||||| |||||||| ||| |||||||    
T  46269275 tttttcagggttatttggtttaccactatttgggtgatttggaaggaaaggaataatcgggtttttca 46269208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 191 - 276
Target Start/End: Complemental strand, 23756863 - 23756778
Alignment:
Q  191 aaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaattttattctt 276  Q
    |||||||||||||||||||||| ||  ||||| ||||||||||| | || ||||||  |||||| |||| ||||| |||| |||||    
T  23756863 aaacaggtggcttttgtttatacttttcacgattggtggagacatctcactctttgcatgggtgctcttttgtaatttttgttctt 23756778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 185 - 270
Target Start/End: Original strand, 47671316 - 47671401
Alignment:
Q  185 aaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 270  Q
    ||||| ||||||| |  ||||||||||  ||||||||| ||||||| ||| ||  |||||||| ||||||||||||||||| ||||    
T  47671316 aaatctaaacaggcgaattttgtttattcttaccacgattggtggaaacaccctgttctttgtatgggtgttcttatgtaattttt 47671401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 53 - 108
Target Start/End: Original strand, 48242237 - 48242292
Alignment:
Q  53 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 108  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||||| | ||||||    
T  48242237 tttttcagggttatttggtttgccactatttgggtgatttggaaggaaaagaataa 48242292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Complemental strand, 22157868 - 22157822
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccg 111  Q
    ||||||||||||  ||||||||||||||||||||| ||||| |||||    
T  22157868 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccg 22157822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 6043733 - 6043684
Alignment:
Q  191 aaacaggtggcttttgtttatagttaccacgactggtggagacaacccat 240  Q
    |||||||||| ||||||||||  ||||||||||||||||| ||| |||||    
T  6043733 aaacaggtggattttgtttattcttaccacgactggtggaaacaccccat 6043684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 258
Target Start/End: Complemental strand, 81645 - 81533
Alignment:
Q  146 ctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattcttt 245  Q
    ||||| |||| ||||||||  ||||  | |||||||||||  || ||||||||||||| || |||||  || ||||||||||||| ||| | ||||  ||    
T  81645 ctcatcgaaatagtaaagtataattcttacttatggttgaggtctaaacaggtggcttctgcttatacatagcacgactggtggaaacacctcatttctt 81546  T
Q  246 gtttgggtgttct 258  Q
    || ||||||||||    
T  81545 gtatgggtgttct 81533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 45813958 - 45813902
Alignment:
Q  172 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 228  Q
    |||||||||||||||| | ||||| ||   ||||| |||||||||||||||||||||    
T  45813958 attcttatggttgaaaactaaacaagttaattttgcttatagttaccacgactggtg 45813902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 9e-24; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 56 - 256
Target Start/End: Complemental strand, 13808078 - 13807878
Alignment:
Q  56 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaa 155  Q
    |||||||||||||||||||||| ||||||| |||||||||||||   ||| ||| || | || || || ||  ||||  |||| | | |||||||||||     
T  13808078 ttcaggattatttggtttgcaactgtttggatgatttggaaggaattgaacaactgggtattccaaaatacactttccgctccttcttctctcattgaac 13807979  T
Q  156 aagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgt 255  Q
    |||||||||| ||||  || |||||||||||||| ||||| ||||| || | ||||||||| || || ||||||| ||| | |||||||||| |||||||    
T  13807978 aagtaaagttaaattcctttttatggttgaaatcaaaacatgtggcgttcgcttatagttatcatgattggtggaaacacctcattctttgtatgggtgt 13807879  T
Q  256 t 256  Q
    |    
T  13807878 t 13807878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 13760835 - 13761013
Alignment:
Q  20 aagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttc 119  Q
    |||||||||||||||||   |||| | || |||||  | ||||| ||||||||||| | |||||||||||| || ||||| |||||||||||  | ||||    
T  13760835 aagatggcgggcatgccaagattttctcatttattcctaaggataatttggtttgctactgtttgggtgatatgaaaggaaaggaataaccgtgtctttc 13760934  T
Q  120 ataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtg 199  Q
    | || || ||||||| ||  |||| ||||||||||||||| ||| | |||| |||||||||||||||||| |||||||||    
T  13760935 aaaatacagtttcta-tctttttattctcattgaaaaagttaagctaaattcattcttatggttgaaatcaaaacaggtg 13761013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 43884031 - 43883964
Alignment:
Q  53 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 120  Q
    ||||| ||| ||||||||||||| | | ||||||||||||||||||| |||||||| ||| |||||||    
T  43884031 ttttttagggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcgggtttttca 43883964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 19480743 - 19480659
Alignment:
Q  173 ttcttatggttgaaatcgaaacaggtggct-tttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttc 257  Q
    ||||||||||||||||| ||||||| |||| |||  ||| |||||||| |||||||||| ||| ||| |||||||| |||||||||    
T  19480743 ttcttatggttgaaatcaaaacagg-ggctatttagttacagttaccatgactggtggaaacatccccttctttgtatgggtgttc 19480659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 1718297 - 1718361
Alignment:
Q  56 ttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 120  Q
    |||||| ||||||||||||| | | ||| ||||||||||||||| |||||||| ||| |||||||    
T  1718297 ttcagggttatttggtttgccactatttaggtgatttggaaggaaaggaataatcgggtttttca 1718361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 6802788 - 6803008
Alignment:
Q  50 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 149  Q
    ||||| |||| ||||||||||||||  | | ||||||||||||||||||| ||||| || | ||| ||| |||  |||||||| | |   || ||||| |    
T  6802788 ttattcttcacgattatttggtttgtcactatttgggtgatttggaaggaaaggaacaatcagatatttaatagtacggtttccaataatttgactctta 6802887  T
Q  150 ttgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgttt 249  Q
    | || || || |||||| |||  ||| | ||| | ||||| |||  ||||  ||||| ||||  ||||||||| ||||||| ||| ||  |||||||| |    
T  6802888 tagagaaggtgaagttgcattccttcctttggcttaaatctaaattggtgaattttgcttattcttaccacgattggtggaaacaccctgttctttgtat 6802987  T
Q  250 gggtgttcttatgtaaatttt 270  Q
    |||||||||||||||| ||||    
T  6802988 gggtgttcttatgtaattttt 6803008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 270
Target Start/End: Original strand, 29802594 - 29802722
Alignment:
Q  142 tactctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccatt 241  Q
    |||||||||||| ||||| ||||||||||  || ||||||||||||||||| || ||  |  ||| || | |||| || |||| |||| |||| ||  ||    
T  29802594 tactctcattgataaagttaagttgaattcctttttatggttgaaatcgaatcaagttccgattgctttttgttatcatgactagtggtgacacccgctt 29802693  T
Q  242 ctttgtttgggtgttcttatgtaaatttt 270  Q
    |||| | ||||||||||||||||| ||||    
T  29802694 ctttatatgggtgttcttatgtaattttt 29802722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 49146368 - 49146408
Alignment:
Q  56 ttcaggattatttggtttgcaattgtttgggtgatttggaa 96  Q
    ||||||||||||| |||||||| ||||||||||||||||||    
T  49146368 ttcaggattattttgtttgcaactgtttgggtgatttggaa 49146408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 9598592 - 9598637
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataacc 110  Q
    ||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  9598592 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9598637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 9826163 - 9826208
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataacc 110  Q
    ||||||||||||  ||||||||||||||||||||| ||||| ||||    
T  9826163 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaacc 9826208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 26159689 - 26159774
Alignment:
Q  145 tctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 230  Q
    ||||||||||||||| ||| | |||| |||||| |||||||||||  |||| ||| | |||  ||||||||| || ||||||||||    
T  26159689 tctcattgaaaaagttaagctaaattcattcttgtggttgaaatcataacatgtgtcatttagttatagttatcatgactggtgga 26159774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 50 - 230
Target Start/End: Complemental strand, 3159746 - 3159566
Alignment:
Q  50 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 149  Q
    ||||| |||||||||||||||||||| | | |||||||| |||||||||| |||||||||||| | ||||| || || | ||| ||| | |||  |||||    
T  3159746 ttattcttcaggattatttggtttgccactatttgggtgctttggaaggaaaggaataaccgggtatttcaaaatactggttccacttcttttgttctca 3159647  T
Q  150 ttgaaaaagtaaag-ttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 230  Q
    |||||||||||||| || ||| | ||||| ||| ||||||| |||||||  ||||||| |||   |||||||||||||||||    
T  3159646 ttgaaaaagtaaagcttcaatct-ttcttttggctgaaatctaaacaggctgcttttgattacgcttaccacgactggtgga 3159566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 270
Target Start/End: Original strand, 38394746 - 38394966
Alignment:
Q  50 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 149  Q
    |||||||||| ||||||||||||||  | | ||||| |  |||||||||| ||||| |  ||| | ||||| ||   || |||||| |  ||||||||||    
T  38394746 ttatttttcaagattatttggtttgttactatttggatcctttggaaggaaaggaacagtcgggtatttcaaaatttggcttctacacaatttactctca 38394845  T
Q  150 ttgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgttt 249  Q
    |||||||||| ||| |  |||  ||| | ||| ||||||| ||||||||||||||||  |||| ||||||||| ||||||| |||  | |||||||||      
T  38394846 ttgaaaaagtgaagcttcattccttcctttggatgaaatctaaacaggtggcttttgcctatacttaccacgattggtggaaacactcaattctttgtac 38394945  T
Q  250 gggtgttcttatgtaaatttt 270  Q
    |||||||| | ||||| ||||    
T  38394946 gggtgttcgtttgtaattttt 38394966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 43858347 - 43858280
Alignment:
Q  53 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttca 120  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||||| |||||||| ||| |||||||    
T  43858347 tttttcagggttatttggtttgccactatttgggtgatttggaaggaaaggaataatcgggtttttca 43858280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 47746470 - 47746376
Alignment:
Q  14 ttcaccaagatggcgggcatgccgttatttccacacttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 108  Q
    ||||| ||||||||||| |||||  | ||| | || |||| ||||||||||||||||||||| | ||||| ||||||||||||||| | ||||||    
T  47746470 ttcactaagatggcgggaatgcctctttttactcagttatatttcaggattatttggtttgccactgtttaggtgatttggaaggaaatgaataa 47746376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 108
Target Start/End: Original strand, 10927136 - 10927179
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataa 108  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||    
T  10927136 atttgatttgcaactgtttgggtgatttggaaggagaggaataa 10927179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 53505588 - 53505633
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataacc 110  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||    
T  53505588 atttggtttgctgttgtttgggttatttggaaggagaggaataacc 53505633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 41226543 - 41226595
Alignment:
Q  176 ttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 228  Q
    |||||||||||| | ||||||||   |||||||||||||||||||||||||||    
T  41226543 ttatggttgaaaactaaacaggttaattttgtttatagttaccacgactggtg 41226595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 78 - 120
Target Start/End: Complemental strand, 11874440 - 11874398
Alignment:
Q  78 ttgtttgggtgatttggaaggagaggaataaccggatttttca 120  Q
    |||| ||||||||||||||||||||||| ||||| ||||||||    
T  11874440 ttgtgtgggtgatttggaaggagaggaacaaccgaatttttca 11874398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 111
Target Start/End: Original strand, 15206043 - 15206089
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccg 111  Q
    ||||||||||||  ||||||||||||||||||||| ||||| |||||    
T  15206043 atttggtttgcatctgtttgggtgatttggaaggaaaggaacaaccg 15206089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 230
Target Start/End: Original strand, 18992050 - 18992132
Alignment:
Q  145 tctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 230  Q
    |||||| |||||||||||||| |||| |||||||||||||||||| ||| ||||||| ||||   |||||||||||||||||||||    
T  18992050 tctcatcgaaaaagtaaagttaaattcattcttatggttgaaatctaaataggtggcctttg---atagttaccacgactggtgga 18992132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 81 - 270
Target Start/End: Complemental strand, 48489305 - 48489116
Alignment:
Q  81 tttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatg 180  Q
    |||||||| |||||||||| || || |||||| | ||||| || |||| ||| ||| | |||  ||||||||||||||||||| | ||||  ||| | ||    
T  48489305 tttgggtgctttggaaggaaagaaacaaccgggtatttcaaaatacgggttccacttcttttgttctcattgaaaaagtaaagcttaattctttcctttg 48489206  T
Q  181 gttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgttcttatgtaaatttt 270  Q
    | ||||||| ||||||   ||||||| |||   ||||||||||||||||| ||| ||||| |  ||| |||||||| |||||||| ||||    
T  48489205 gctgaaatctaaacagactgcttttgattacgcttaccacgactggtggaaacaccccatcccgtgtatgggtgttattatgtaattttt 48489116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 270
Target Start/End: Complemental strand, 12377043 - 12376823
Alignment:
Q  50 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctca 149  Q
    ||||| |||| ||||||||||||||  | | ||||||||||||||||||| ||||| || ||||| ||| |||  |||||||||| |   |||||||  |    
T  12377043 ttattcttcacgattatttggtttgtcactatttgggtgatttggaaggaaaggaacaatcggatatttaatagtacggtttctaataattttactcata 12376944  T
Q  150 ttgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgttt 249  Q
    | || || || ||| || |||  ||| | ||| | ||||| ||||||| |  ||||| ||||  ||||||||| ||||||| ||| ||  |||||||| |    
T  12376943 tagagaaggtgaagctgcattccttcctttggcttaaatctaaacaggcgaattttgcttattcttaccacgattggtggaaacaccctgttctttgtat 12376844  T
Q  250 gggtgttcttatgtaaatttt 270  Q
    |||||||||||||||| ||||    
T  12376843 gggtgttcttatgtaattttt 12376823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 53480831 - 53480776
Alignment:
Q  53 tttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataa 108  Q
    ||||||||| ||||||||||||| | | ||||||||||||||||||| ||||||||    
T  53480831 tttttcagggttatttggtttgccactatttgggtgatttggaaggaaaggaataa 53480776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 41147925 - 41148011
Alignment:
Q  144 ctctcattgaaaaagtaaagttgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtgga 230  Q
    ||||||||||||| || || || |||| |||||||||||||||||| ||||||||  | |||| ||||| ||| ||||| |||||||    
T  41147925 ctctcattgaaaaggttaaattaaattcattcttatggttgaaatctaaacaggtcacatttgcttataattatcacgattggtgga 41148011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 201
Target Start/End: Complemental strand, 3693251 - 3693116
Alignment:
Q  63 ttatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaa 162  Q
    ||||||||||||||| | ||||||  ||||||||| |||| ||||| ||  | || || ||||||||||| |||||  ||| |||| ||||||| || ||    
T  3693251 ttatttggtttgcaactatttgggcaatttggaagaagagaaataatcgtgtattccaaaacacggtttccactcc--ttattctc-ttgaaaaggttaa 3693155  T
Q  163 gttgaatttattcttatggttgaaatcgaaacaggtggc 201  Q
    | | ||||  ||||||||||||||||| || ||||||||    
T  3693154 ggttaattctttcttatggttgaaatctaatcaggtggc 3693116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 255
Target Start/End: Complemental strand, 11581359 - 11581185
Alignment:
Q  81 tttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagttgaatttattcttatg 180  Q
    ||||| ||||||||||||| ||||||||| |  | || || |||||  |||| ||||| | | ||||| |||||| ||| ||| | |||| ||| |||||    
T  11581359 tttggatgatttggaaggaaaggaataactgtgtattccaaaacacaatttccactccttattctctccttgaaagagttaaggtaaattcattgttatg 11581260  T
Q  181 gttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtggagacaacccattctttgtttgggtgt 255  Q
    ||||||||  ||||| || || ||   |||||| ||||| || ||||||| ||| | |||||||||| |||||||    
T  11581259 gttgaaatttaaacatgtagcgttcaattatagctaccatgattggtggaaacatctcattctttgtatgggtgt 11581185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 228
Target Start/End: Complemental strand, 2473583 - 2473527
Alignment:
Q  172 attcttatggttgaaatcgaaacaggtggcttttgtttatagttaccacgactggtg 228  Q
    |||||||||||||||||| |||||||  | ||||| ||||||||||  |||||||||    
T  2473583 attcttatggttgaaatctaaacaggctgattttgcttatagttactgcgactggtg 2473527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 217
Target Start/End: Original strand, 4076 - 4228
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggtttctactccctttactctcattgaaaaagtaaagt 164  Q
    ||||||||||||| | |||| ||||||||||| || ||||| ||||    |||||| || ||||| ||  |||| |||  ||||||||| ||| | ||||    
T  4076 atttggtttgcaactatttgagtgatttggaaagaaaggaacaaccatccttttcaaaatacggtatccgctccttttgttctcattgataaaattaagt 4175  T
Q  165 tgaatttattcttatggttgaaatcgaaacaggtggcttttgtttatagttac 217  Q
    |  ||| |||||||||||||||||| ||||| | |||||| || |||||||||    
T  4176 ttcattcattcttatggttgaaatctaaacaagcggctttcgtatatagttac 4228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 129
Target Start/End: Original strand, 218174 - 218253
Alignment:
Q  50 ttatttttcaggattatttggtttgcaattgtttgggtgatttggaaggagaggaataaccggatttttcataacacggt 129  Q
    |||| ||| ||||||||||||||  | | | |||||| ||||||||||||||||||||||||  ||||||| || |||||    
T  218174 ttatattttaggattatttggttatctactatttgggagatttggaaggagaggaataaccgtgtttttcaaaatacggt 218253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 25786 - 25827
Alignment:
Q  65 atttggtttgcaattgtttgggtgatttggaaggagaggaat 106  Q
    ||||||||||||| ||||||| ||||||||||||| ||||||    
T  25786 atttggtttgcaactgtttggatgatttggaaggaaaggaat 25827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University