View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_71 (Length: 332)
Name: NF8905A_low_71
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_71 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 3 - 332
Target Start/End: Complemental strand, 52199773 - 52199444
Alignment:
| Q |
3 |
gtttggagttcacaggacagcatcgctgaaatctgaagttgcagtgattggtgggagtggtaagtacgagaatgcaaggggatatgcagctcttgagaca |
102 |
Q |
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| T |
52199773 |
gtttggagttcacaggacagcatcgctgaaatctgaagttgcagtgattggtgggagtggtaagtacgagaatgcaaggggatatgcagctcttgagaca |
52199674 |
T |
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| Q |
103 |
ctgctgaaagaggatcagcacaccacggatggagtcgacaccatcatccatttcaatatctaccttactcactaatatgaatatctactttcattctcat |
202 |
Q |
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| T |
52199673 |
ctgctgaaagaggatcagcacaccacggatggagtcgacaccatcatccatttcgatatctaccttactcactaatatgaatatctactttcattctcat |
52199574 |
T |
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| Q |
203 |
tggctttcatgccattttgcatttgatgttttgaattctgcatgcccactggttaagatagataaaaatgagttatatttccacaccctttttcatgcaa |
302 |
Q |
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| T |
52199573 |
tggctttcatgccattttgcatttgatgttttgaattctgcatgcccactggttaagatagataaaaatgagttatatttccacaccctttttcatgcaa |
52199474 |
T |
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| Q |
303 |
cacgtttttagaattttggttttcttttga |
332 |
Q |
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| T |
52199473 |
cacgtttttagaattttggttttcttttga |
52199444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 167
Target Start/End: Original strand, 6735309 - 6735433
Alignment:
| Q |
43 |
gcagtgattggtgggagtggtaagtacgagaatgcaaggggatatgcagctcttgagacactgctgaaagaggatcagcacaccacggatggagtcgaca |
142 |
Q |
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| T |
6735309 |
gcagtgattggtgggactgggaagtatgagaatgctagaggatatgctgcaattgagaacctactgaaggaggaccaacacaccacagatggggctgaca |
6735408 |
T |
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| Q |
143 |
ccatcatccatttcaatatctacct |
167 |
Q |
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| T |
6735409 |
ccatcttgcatttcagtatctacct |
6735433 |
T |
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