View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_73 (Length: 329)
Name: NF8905A_low_73
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_73 |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 24863648 - 24863754
Alignment:
| Q |
24 |
ggtccaatgtgcacacgtgccatgtttctccaccgtccattgttacctcgactcgtgtcacttttctaccaccccctacaacaaagtacaccatcaatgt |
123 |
Q |
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| T |
24863648 |
ggtccaatgtgcacacgtgccatgtttctccaccgtccattgttacctcgactcgtgtcacttttctaccaccccctataacaaagtacaccaccaatgt |
24863747 |
T |
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| Q |
124 |
cagtttt |
130 |
Q |
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||||||| |
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| T |
24863748 |
cagtttt |
24863754 |
T |
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Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 175 - 289
Target Start/End: Original strand, 41641841 - 41641954
Alignment:
| Q |
175 |
gatatgaatgatgatgatcatgtttagagttacatgtctatgtttaatgttctttttaatcccctttccattgttaatgttctagaaagtaaattattat |
274 |
Q |
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| T |
41641841 |
gatatggatgatgatgatcatgtttagaattacatgtctatgtttaatgttctttttaat-ccctttccattgttaatgttctagaaaggaaattattat |
41641939 |
T |
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| Q |
275 |
ttgtacataaatgac |
289 |
Q |
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| T |
41641940 |
ttgtacataaatgac |
41641954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 32988633 - 32988709
Alignment:
| Q |
24 |
ggtccaatgtgcacacgtgccatgtttctccaccgtccattgttacctcgactcgtgtcacttttctaccaccccct |
100 |
Q |
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| T |
32988633 |
ggtccaatgtgcatacttgccatgtttcaccaccgtccattgttacttcaacacgtgtcacctttctaccaccccct |
32988709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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