View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_76 (Length: 321)

Name: NF8905A_low_76
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_76
NF8905A_low_76
[»] chr1 (1 HSPs)
chr1 (7-321)||(6623060-6623374)


Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 321
Target Start/End: Original strand, 6623060 - 6623374
Alignment:
Q  7 tttggtgttcaattgaattatccttgcaaagccattcccttaaagacccattttccatgtattcataaacaagatagatgcaagcatcgttttcacagta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6623060 tttggtgttcaattgaattatccttgcaaagccattcccttaaagacccattttccatgtattcataaacaagatagatgcaagcatcgttttcacagta 6623159  T
Q  107 accttgcagctttatcaggttgaaatgattgatccttttcagcaaattgacttctttgaaagcatctcctctcattcttttaacagccaatacttccttg 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  6623160 accttgcagctttatcaggttgaaatgattgatccttttcagcaaattgacttctttggaagcatctcctctcattcttttaacagccaacacttccttg 6623259  T
Q  207 ccattgttgaatatgccgcgaaataaagaacctttgattctattctttgaactaaaattctcagttgcttcttttatttcctcaaagctatacactttgg 306  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6623260 ccattgttgaatatgccgcgaaataaagaatctttgattctattctttgaactaaaattctcagttgcttcttttatttcctcaaagctatacactttgg 6623359  T
Q  307 agagatgttcaatga 321  Q
    |||||||||||||||    
T  6623360 agagatgttcaatga 6623374  T

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