View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_77 (Length: 320)
Name: NF8905A_low_77
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_77 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr3 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 41681127 - 41680789
Alignment:
| Q |
1 |
tggtgttagggtgttaggtggtgcaaatgccaattttcacaatgccaacaagatgttgatcaagtgaaatggaggtggttttttggctatgttcagtgta |
100 |
Q |
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|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41681127 |
tggtgtcagggtattaggtggtgcaaatgccaattttcacaatgccaacaagatgttgatcaagtgaaatggaggtggttttttggctatgttcagtgta |
41681028 |
T |
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| Q |
101 |
tagacaagtcaacactattgtgcaaagtgagggtaggatgcccatctat-------------------atttatggttaggcagcgaggttataccttag |
181 |
Q |
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| T |
41681027 |
tagacaagtcaacactgttctgcaaagtgagggtaggatgcccatctatttttttgtggtttcaatttatttatggttaggcagcgaggttataccttac |
41680928 |
T |
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| Q |
182 |
ggatggacattatgttagacactggagtgcagcaaggtgactcgaaggggactctcctttttgctcttgtgttacaccttcttattaattaaatcaaata |
281 |
Q |
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| T |
41680927 |
ggatggacattatgtaagtcactggagtgcagcaagttgacttgaaggggactctcctttttgctcttgtgttacacattcttattaattaaattaaata |
41680828 |
T |
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| Q |
282 |
caattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
41680827 |
caattgcaagttttttcttcatacttggtatcttgatga |
41680789 |
T |
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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 24323091 - 24323006
Alignment:
| Q |
235 |
ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
24323091 |
ctcctttttgctcttatgttgcaccctcttattcagcatatcaaagatagttgcaagcttcttcttcatgcttggtatcttgatga |
24323006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 19280043 - 19279958
Alignment:
| Q |
235 |
ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
19280043 |
ctcctttttgctcttgtgttgcaccctcttattcatcatatcagagatagttgcaagcttcttcttcatgcttggtaccttgatga |
19279958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 6820794 - 6820879
Alignment:
| Q |
235 |
ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
6820794 |
ctccttttttctcttttgttacaccctcttattcatcaattcaaagatagttgcaagcttctttttcatgcttggtatcttgatga |
6820879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 320
Target Start/End: Original strand, 6251837 - 6251953
Alignment:
| Q |
203 |
ctggagtgcagcaaggtgactcgaaggggactctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttca |
302 |
Q |
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| T |
6251837 |
ctggagtgcaacaaggtgacccataggg-acgctcctttttgctcttatgttacaccctcttattcatcagattagaaatagttgcaagcttcttcttca |
6251935 |
T |
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| Q |
303 |
tgcttggtatcttgatga |
320 |
Q |
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| T |
6251936 |
tgtttggtatcttgatga |
6251953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 53379118 - 53379033
Alignment:
| Q |
235 |
ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
53379118 |
ctcctttttgctcgtgtgttgcaccctcttattcatcatatcagagatagttgcaagcttcttcttcatgcttggtatcttgatga |
53379033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 320
Target Start/End: Original strand, 6172525 - 6172610
Alignment:
| Q |
235 |
ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
6172525 |
ctcctttttgctcttatgttacaccctcttattcatcagattagaaatagttgcaagattcttcttcatgtttggtatcttgatga |
6172610 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 320
Target Start/End: Complemental strand, 19036903 - 19036818
Alignment:
| Q |
235 |
ctcctttttgctcttgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
19036903 |
ctcctttttgctcttgtgttgcaccctcttattcatcatatcagagatagttgcaagcttattcttcatgcttggtaccttgatga |
19036818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 320
Target Start/End: Original strand, 9683977 - 9684148
Alignment:
| Q |
151 |
tttatggttaggcagcgaggttataccttagggatggacat--tatgttagacactggagtgcagcaaggtgactcgaaggggactctcctttttgctct |
248 |
Q |
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||||||| ||||| |||| ||||||||| | ||||||||| ||||| | ||||||||||| ||||| ||| || ||| | |||||||||||||| |
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| T |
9683977 |
tttatggacaggcaacgagattataccttggtgatggacatattatgtctgctactggagtgcaacaaggcgacccgttagggccgctcctttttgctct |
9684076 |
T |
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| Q |
249 |
tgtgttacaccttcttattaattaaatcaaatacaattgcaagtttttccttcatgcttggtatcttgatga |
320 |
Q |
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| T |
9684077 |
tgtgttgcaccctcttattcatcagatcagagatagttgcaaacttcttcttcatgcttggtaccttgatga |
9684148 |
T |
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