View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_8 (Length: 481)
Name: NF8905A_low_8
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 25 - 470
Target Start/End: Original strand, 14618268 - 14618720
Alignment:
| Q |
25 |
agtttcatttcaatctaccaggtacttctctctgctatttctaattcattcaatgttattttgatttatattttcccaccatggttgttttggacttttg |
124 |
Q |
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| T |
14618268 |
agtttcatttcaatctaccaggtacttctctctgctatttctaattcattcaatgttattttgatttatattttcccaccatggttgttttggacttttg |
14618367 |
T |
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| Q |
125 |
tgatcattgattaagttttgttgtgattaagttttcccaccatttagagatgactactagaaaaccacataggtaaaattgttaattgtagtgttttctt |
224 |
Q |
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| T |
14618368 |
tgatcattgattaagttttgttgtgattaagttttcccaccatttagagatttctactggaaaaccacataggtaaaattgttaattgtaatgttttctt |
14618467 |
T |
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| Q |
225 |
aaactggtcatgtaaaatttgtattatgaatg-ttgacc------tgtttgtatgaatgatctagattctctttggttcttcaacctcttgatgaataaa |
317 |
Q |
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| T |
14618468 |
aaactggtcatgtaaaatttgtattatgaatgattgacctgtttgtgtttgtatgaatgatctatattctctatggttcttcaacctctt-atgaataaa |
14618566 |
T |
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| Q |
318 |
-ttaactttgttttcatttggtttattgtgattggatttttgtccaatctcatctcctgttgttacaatttagtggtttgactgtgatgacattttatgt |
416 |
Q |
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| T |
14618567 |
gttaactttgttttcatttggtttattgtgattggatttttgtctaatctcatctcctgttgttacaatttagtggtttgactgtgatgacattttatgt |
14618666 |
T |
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| Q |
417 |
gtagaccctgacttgaactcgtcccccatccccgtgtgtctttaactgagtata |
470 |
Q |
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| T |
14618667 |
gtagaccctgatttgaacccgtcccccatacccgtgtgtctttaactgagtata |
14618720 |
T |
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