View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_82 (Length: 314)
Name: NF8905A_low_82
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 44535094 - 44535336
Alignment:
| Q |
1 |
aaggttactaccaacatgagggagaagatgagaaactcatcaacttcattataatatgatcataatgaggtaaagaaagttgaggactcctttgaaacaa |
100 |
Q |
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| T |
44535094 |
aaggttactaccaacatgagggagaagatgagaaactcatcaacttcattatcatatgatcataatgaggtaaagaaagttgaggactcctttgaaacaa |
44535193 |
T |
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| Q |
101 |
ataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgattcaaaggcttcaatc |
200 |
Q |
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| T |
44535194 |
ataagaagctagagaggaagactacagaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgattcaaaggcttcaatc |
44535293 |
T |
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| Q |
201 |
cattgagaattatgagaaaatgcttgcaaggggtctctagcac |
243 |
Q |
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| T |
44535294 |
cattgagaattatgagaaaatgcttgcaaggggtctctagcac |
44535336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 126 - 233
Target Start/End: Complemental strand, 2579963 - 2579856
Alignment:
| Q |
126 |
agaagacatcaatgccagtgctgatgccttcatcaagaatttcaggaaacaactcgtgattcaaaggcttcaatccattgagaattatgagaaaatgctt |
225 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||| || ||| | || || || |||| ||||||||||| |||||||||||||||||||||||| |
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| T |
2579963 |
agaagatatcaatgctagtgctgatgccttcattaagaactttaggcagcagcttatgcttcagaggcttcaatctattgagaattatgagaaaatgctt |
2579864 |
T |
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| Q |
226 |
gcaagggg |
233 |
Q |
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|| ||||| |
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| T |
2579863 |
gctagggg |
2579856 |
T |
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