View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_84 (Length: 311)
Name: NF8905A_low_84
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_84 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 20 - 311
Target Start/End: Complemental strand, 5827291 - 5827000
Alignment:
| Q |
20 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataacagtgtgcctctttcgc |
119 |
Q |
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| T |
5827291 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataactgtgtgcctctttcgc |
5827192 |
T |
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| Q |
120 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
219 |
Q |
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| T |
5827191 |
ctaccgaagtattgtaaccacctggaagagagcttatgaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
5827092 |
T |
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| Q |
220 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagtt |
311 |
Q |
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| T |
5827091 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagcttagtt |
5827000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 23 - 310
Target Start/End: Complemental strand, 5768835 - 5768548
Alignment:
| Q |
23 |
gcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataacagtgtgcctctttcgccta |
122 |
Q |
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| T |
5768835 |
gcctcgtcaagcaaaagtattttggggtttttcagcatggctcttgcaatagcaatacgctgcttctgtcctcctgatagctgtgtgcctctttccccga |
5768736 |
T |
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| Q |
123 |
ccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttcttt |
222 |
Q |
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| T |
5768735 |
cagaggtgtcataaccatttggaagagagcttatgaaattgtgtgcattggctgctttagctgctgcaattatctcatcctccatagcacctccttcttt |
5768636 |
T |
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| Q |
223 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagt |
310 |
Q |
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| T |
5768635 |
gccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagcttagt |
5768548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 152 - 308
Target Start/End: Original strand, 5829742 - 5829898
Alignment:
| Q |
152 |
cttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttctttgccataagctatgttggcacgaatgcttt |
251 |
Q |
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| T |
5829742 |
cttatgaagctgtgtgcatttgctgcgttagctgctgcaatgatctcatcctctgtagcacccccttcttttccataacctatgttagcacgaatgcttt |
5829841 |
T |
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| Q |
252 |
cgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagctta |
308 |
Q |
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| T |
5829842 |
cgttgaaaagaataggctcttgaccaaccaaccccatttgttgtctcaaccagctta |
5829898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 5794883 - 5794793
Alignment:
| Q |
20 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataacagtgtgcctctttcg |
118 |
Q |
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| T |
5794883 |
gttgcctcatcaagtaaaagtattctagggtctttcaatatagctcttgca--------acattgtttttgtccacctggtaactgtgtgcctctttcg |
5794793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 153; Significance: 4e-81; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 20 - 308
Target Start/End: Original strand, 29327124 - 29327412
Alignment:
| Q |
20 |
gttgcctcatcaagtaaaagtattctagggtttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataacagtgtgcctctttcgc |
119 |
Q |
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|||||||||||||| ||||||||| |||||||||||| || ||||||||||| || || || || || ||||| || |||| ||||||||||||||| |
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| T |
29327124 |
gttgcctcatcaagcaaaagtattttagggtttttcagcatggctcttgcaatcgcaatgcgctgcttctgtcctccagatagttgtgtgcctctttcgc |
29327223 |
T |
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| Q |
120 |
ctaccgatgtattgtaaccacctggaagagagcttataaagttgtgtgcattggctgcgttagctgctgcaattatctcatcctccgtagcacctccttc |
219 |
Q |
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| T |
29327224 |
caacagaagtgtcataaccatcaggaagagaacttatgaagttgtgtgcattggctgcgttcgctgctgctatgatctcatcctccgtagcaccatcttc |
29327323 |
T |
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| Q |
220 |
tttgccataagctatgttggcacgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatctgttgtctcaaccagctta |
308 |
Q |
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| T |
29327324 |
tttaccataagctatgttggcgcgaatgctttcgttgaaaagaataggctcttgaccaaccaaacccatttgttgtctcaaccagctta |
29327412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 3431216 - 3431268
Alignment:
| Q |
50 |
tttttcaatatagctcttgcaattgctatacgttgtttttgtccacctgataa |
102 |
Q |
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| T |
3431216 |
tttttcaacatagctcttgcaattgcaatcctttgcttttgtccaccagataa |
3431268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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