View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_85 (Length: 310)
Name: NF8905A_low_85
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_85 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 49437565 - 49437264
Alignment:
| Q |
1 |
attaagtctacaactttccannnnnnnggtttataaatttgttgaatccatttatcatacttcaattaaatttgttgaccttgtgtatgactttatccat |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49437565 |
attaagtctacaactttccatttttt-ggtttataaatttgttgaatccatttatcatacttcaattaaatttgttgaccttgtgtatgactttatccat |
49437467 |
T |
|
| Q |
101 |
ttgttagaggtaaaacaaaggggatgatcatgtatagtcttaggatcatttataaactacacatatgcaactttgaattctatctcaataagatcttcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49437466 |
ttgttagaggtaaaacaaaggggatgatcatgtatagtcttaggatcatttataaactacacatatgcaactttgaattctatctcaataagatcttcca |
49437367 |
T |
|
| Q |
201 |
tttgaaagatccttatgttttaaaatagttttttagccttggttagctcatcggtccacagctctgttttttgagtacaagtaaatacactctatattct |
300 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | |
|
|
| T |
49437366 |
tttgaaagatctttatgttttaaaatagttttttacccttggttagctcatcggtccacagctctgttttttgagttcaagaaaatacactctatattgt |
49437267 |
T |
|
| Q |
301 |
tcg |
303 |
Q |
| |
|
||| |
|
|
| T |
49437266 |
tcg |
49437264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University