View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_86 (Length: 310)
Name: NF8905A_low_86
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 4 - 305
Target Start/End: Original strand, 2466650 - 2466930
Alignment:
| Q |
4 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2466650 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
2466749 |
T |
|
| Q |
104 |
actatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaat |
203 |
Q |
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||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2466750 |
act---ttggtgaaaagccatactaagtg----------------tttcactttaagctata--tagaaaccataccatatgatggataaataaataaat |
2466828 |
T |
|
| Q |
204 |
aaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgacatttctcgtattattggagtataataaaataat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |
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| T |
2466829 |
aaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatatttatagttatcatatgatatttctcatattattggagtataataaaataat |
2466928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 2462602 - 2462832
Alignment:
| Q |
4 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2462602 |
caggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccaggca |
2462701 |
T |
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| Q |
104 |
actatgttggtgaaaagccatactaagtgcatgcttaatagaatgtttcaatttaagctatatatagaaaccataccatatgatggataaataaataaat |
203 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2462702 |
actatgttggtgaaaagccatactaag----------------tgtttcactttaagc--tatatagaaaccataccatatgatggataaataaataaat |
2462783 |
T |
|
| Q |
204 |
aaatggcagggtaaacgtacgtacgtaatgagttcctgactcattatat |
252 |
Q |
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|||| |||||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
2462784 |
aaattgcagggtaaacgtatgtacgtaatgagttcttgactcattatat |
2462832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 3063398 - 3063274
Alignment:
| Q |
1 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3063398 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
3063299 |
T |
|
| Q |
101 |
gcaactatgttggtgaaaagccata |
125 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
3063298 |
gcaactatgttggtgaaaagccata |
3063274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 2458023 - 2458154
Alignment:
| Q |
1 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
100 |
Q |
| |
|
||||||||||||||||||||| || | ||| |||||||||||||||| |||||| |||||| |||| |||||||||| ||||||||||| ||||||| |
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| T |
2458023 |
actcaggttgtttggagaaacacaaagcgtattggatgtgccaaagtaagatgt---aataatggaggcacattcattatttgcaattacgatccaccag |
2458119 |
T |
|
| Q |
101 |
gcaactatgttggtgaaaagccatactaagtgcat |
135 |
Q |
| |
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|||||||||||||| |||||||||||||||||||| |
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| T |
2458120 |
gcaactatgttggtcaaaagccatactaagtgcat |
2458154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 2469972 - 2470100
Alignment:
| Q |
1 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
100 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||||||||||||||| |||| ||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
2469972 |
actcaggtggtttggagaaacacacaacggattggatgtgccaaagtgaaatgt---aataacggaggaacattcattacttgcaattacgacccaccag |
2470068 |
T |
|
| Q |
101 |
gcaactatgttggtgaaaagccatactaagtg |
132 |
Q |
| |
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|||||||| |||| |||| |||||||||||| |
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| T |
2470069 |
gcaactatattggcgaaagaccatactaagtg |
2470100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 2474243 - 2474368
Alignment:
| Q |
1 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
100 |
Q |
| |
|
|||||||| |||||||||||| || ||||| |||||||||||||||||| ||||| ||||| |||||||||||||||| |||||||||||||| || | |
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| T |
2474243 |
actcaggtggtttggagaaacacaaaacgtattggatgtgccaaagtgaaatgtg---ataatggaggaacattcattacttgcaattacgacccccctg |
2474339 |
T |
|
| Q |
101 |
gcaactatgttggtgaaaagccatactaa |
129 |
Q |
| |
|
|||||||| |||| |||| ||||||||| |
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| T |
2474340 |
gcaactatattggcgaaagaccatactaa |
2474368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 2471017 - 2471090
Alignment:
| Q |
22 |
tcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccacc |
98 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||| |||||||| |||||||| |
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| T |
2471017 |
tcacaacgtgttggatgtggcaaagtgagatgtg---ataatggaggcacattcattacttgcaattatgacccacc |
2471090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2486517 - 2486576
Alignment:
| Q |
1 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataat |
60 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||||||||| |||||||| |||||||||| |
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| T |
2486517 |
actcaggttgtttgggaaaaatcactacgtgttggatgtggcaaagtgaaatgtgataat |
2486576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 18015922 - 18016046
Alignment:
| Q |
1 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18015922 |
actcaggttgtttggagaaactcacaacgtgttggatgtgccaaagtgagatgtgataataatagaggaacattcattacatgcaattacgacccaccag |
18016021 |
T |
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| Q |
101 |
gcaactatgttggtgaaaagccata |
125 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
18016022 |
gcaactatgttggtgaaaagccata |
18016046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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