View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_89 (Length: 308)

Name: NF8905A_low_89
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_89
NF8905A_low_89
[»] chr8 (6 HSPs)
chr8 (5-301)||(30356585-30356882)
chr8 (125-208)||(43612466-43612549)
chr8 (125-198)||(23942863-23942936)
chr8 (125-198)||(24794496-24794569)
chr8 (125-183)||(36157930-36157988)
chr8 (125-182)||(11393638-11393695)
[»] chr5 (11 HSPs)
chr5 (51-265)||(40035878-40036094)
chr5 (80-198)||(26261609-26261728)
chr5 (141-223)||(22438010-22438092)
chr5 (125-235)||(32019161-32019271)
chr5 (125-198)||(588283-588356)
chr5 (126-198)||(19506775-19506847)
chr5 (125-208)||(35121969-35122052)
chr5 (125-183)||(8249627-8249685)
chr5 (141-183)||(34481740-34481782)
chr5 (193-265)||(2682584-2682657)
chr5 (125-182)||(38358243-38358300)
[»] chr1 (15 HSPs)
chr1 (160-245)||(21409052-21409137)
chr1 (160-245)||(22191026-22191111)
chr1 (125-208)||(20796436-20796519)
chr1 (143-245)||(5497880-5497982)
chr1 (136-198)||(33259993-33260055)
chr1 (136-198)||(33280152-33280214)
chr1 (160-235)||(28358702-28358777)
chr1 (67-114)||(33014890-33014937)
chr1 (125-179)||(23450937-23450991)
chr1 (160-245)||(3074555-3074640)
chr1 (125-198)||(7396011-7396084)
chr1 (125-198)||(39431062-39431135)
chr1 (160-233)||(45271052-45271125)
chr1 (145-245)||(32352556-32352656)
chr1 (145-245)||(48072670-48072770)
[»] chr3 (17 HSPs)
chr3 (136-230)||(20797894-20797988)
chr3 (160-245)||(44888715-44888800)
chr3 (127-179)||(45968137-45968189)
chr3 (125-183)||(52907348-52907406)
chr3 (125-182)||(15481065-15481122)
chr3 (136-196)||(20367335-20367395)
chr3 (136-198)||(1709645-1709707)
chr3 (136-198)||(8948310-8948372)
chr3 (125-235)||(11584854-11584964)
chr3 (136-230)||(17914453-17914547)
chr3 (125-198)||(14863747-14863820)
chr3 (125-182)||(24925992-24926049)
chr3 (125-182)||(36709685-36709742)
chr3 (96-198)||(43120965-43121069)
chr3 (141-245)||(6175721-6175825)
chr3 (126-198)||(21739779-21739851)
chr3 (125-197)||(50545019-50545091)
[»] chr2 (13 HSPs)
chr2 (125-198)||(8065552-8065625)
chr2 (125-198)||(44028504-44028577)
chr2 (141-245)||(13551374-13551478)
chr2 (136-203)||(10289352-10289419)
chr2 (136-198)||(39116308-39116370)
chr2 (125-242)||(24738626-24738743)
chr2 (125-182)||(25380701-25380758)
chr2 (125-198)||(35488614-35488687)
chr2 (127-179)||(21579830-21579882)
chr2 (125-182)||(28399857-28399914)
chr2 (125-182)||(32191832-32191889)
chr2 (205-265)||(44940487-44940548)
chr2 (105-265)||(3153042-3153205)
[»] chr7 (11 HSPs)
chr7 (136-234)||(37942109-37942207)
chr7 (160-245)||(17056340-17056425)
chr7 (125-242)||(27853691-27853808)
chr7 (125-245)||(28740179-28740299)
chr7 (125-198)||(19735294-19735367)
chr7 (143-196)||(33820852-33820905)
chr7 (136-183)||(34791981-34792028)
chr7 (141-223)||(45871555-45871637)
chr7 (141-198)||(2820012-2820069)
chr7 (205-265)||(4164895-4164956)
chr7 (205-265)||(34207186-34207247)
[»] chr6 (9 HSPs)
chr6 (141-245)||(26206125-26206229)
chr6 (136-198)||(12687043-12687105)
chr6 (160-245)||(2923641-2923726)
chr6 (136-229)||(17110395-17110488)
chr6 (141-183)||(15674624-15674666)
chr6 (125-179)||(17605644-17605698)
chr6 (125-198)||(1104238-1104311)
chr6 (125-265)||(1307890-1308031)
chr6 (125-182)||(21549623-21549680)
[»] chr4 (10 HSPs)
chr4 (125-183)||(40434025-40434083)
chr4 (125-198)||(42952822-42952895)
chr4 (136-194)||(11527195-11527253)
chr4 (160-206)||(53486212-53486258)
chr4 (141-182)||(20675827-20675868)
chr4 (125-182)||(26694704-26694761)
chr4 (136-271)||(17955323-17955459)
chr4 (145-245)||(23872721-23872821)
chr4 (125-213)||(54871988-54872076)
chr4 (145-245)||(55299417-55299517)


Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 5 - 301
Target Start/End: Original strand, 30356585 - 30356882
Alignment:
Q  5 ctaaaagagcaatgttaaactccctcatccgcagcacccccagaatccatgctcctttcgcatacaaataaactcccaatcaacccaagtaattttcatg 104  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30356585 ctaaaagagcaatgtcaaactccctcatccgtagcacccccaaaatccatgctcctttcacatacaaataaactcccaatcaacccaagtaattttcatg 30356684  T
Q  105 tgatcctcactctcaaccccaaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaaga 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  30356685 tgatcctcactctcaaccccaaaaattattcaaaagagattaaatagaggggataatatttgatggagctttgaagaagcaaagaacatagacatgaaga 30356784  T
Q  205 gaagatagggcagacttaaggagaaccaagcaaccacc-aaagataaatttgtacttttccagcttgatagtctagtcttagtccgggacaacaccaa 301  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30356785 gaagatagggcaaacttaaggagaaccaagcaaccaccaaaagataaatttgtacttttccagcttgatagtctagtcttagtacgggacaacaccaa 30356882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 43612549 - 43612466
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaag 208  Q
    ||||||||||||| | ||||||||| || | ||| ||||||||||||||||| |||||  |||   ||||||||||||||||||    
T  43612549 aaaaattattcaataaagattcaatggaagagattatacctgatggagctttcaagaatgaaagggcatagacatgaagagaag 43612466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 23942863 - 23942936
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| |||| ||||||||||||||||||| ||| | ||||||||    
T  23942863 aaaaattattcaataaagattcaatggaagagattatacatgatggagctttgaagaaggaaagagcatagaca 23942936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 24794496 - 24794569
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| ||||||||||||||||| |||||| ||| | ||||||||    
T  24794496 aaaaattattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagaca 24794569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 36157930 - 36157988
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaag 183  Q
    |||||||||| || | ||||||||| || | ||| ||||||||||||||||||||||||    
T  36157930 aaaaattattaaacaaagattcaatggaagagattatacctgatggagctttgaagaag 36157988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 11393695 - 11393638
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    ||||||||||||| | ||||||||| || | ||| ||||||||||||||||| |||||    
T  11393695 aaaaattattcaacaaagattcaatggaagagattatacctgatggagctttaaagaa 11393638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 9e-36; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 51 - 265
Target Start/End: Complemental strand, 40036094 - 40035878
Alignment:
Q  51 ccatgctcctttcgcatacaaataaactcccaatcaacccaagtaattttcatgtgatcctcactctcaaccccaaaaat-tattcaaaagagattcaat 149  Q
    |||| ||||||||||| ||||||| |||||  |||||| |||||||||||| | |||||||||| | || ||| |||||| |||||||||||||||||||    
T  40036094 ccatactcctttcgcaaacaaatagactcctgatcaactcaagtaattttcctatgatcctcacccccaccccaaaaaatatattcaaaagagattcaat 40035995  T
Q  150 agaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccacc-aaagat 248  Q
    ||||| ||| |||| ||| ||||| ||||||||| ||| || ||||||||| | | | ||||||  | |||||||||||| ||||| |||||| ||||||    
T  40035994 agaggagattatacatgagggagcattgaagaaggaaataaaatagacatgcaaatatgataggataaacttaaggagaatcaagcgaccaccaaaagat 40035895  T
Q  249 aaatttgtacttttcca 265  Q
    ||||||  |||||||||    
T  40035894 aaatttcaacttttcca 40035878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 80 - 198
Target Start/End: Complemental strand, 26261728 - 26261609
Alignment:
Q  80 ccaatcaacccaagtaattttcatgtgatcctcactctcaaccccaaaaa-ttattcaaaagagattcaatagaggggataatacctgatggagctttga 178  Q
    |||| ||| ||||| ||||||| | |||||||||||| || ||| ||||| |||||||||| | |||||||||| | ||| |||||||| ||||||||||    
T  26261728 ccaaccaatccaagaaattttcctatgatcctcactcccaccccaaaaaaattattcaaaataaattcaatagaagagattatacctgaaggagctttga 26261629  T
Q  179 agaagcaaaaaacatagaca 198  Q
    ||||| ||| | ||||||||    
T  26261628 agaaggaaagagcatagaca 26261609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 22438010 - 22438092
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaa 223  Q
    |||||||||| | | ||| |||||||| |||||| |||||||| ||||| |||||||||| ||||||||||||  ||||||||    
T  22438010 agattcaatataagagattatacctgagggagctatgaagaaggaaaaagcatagacatgtagagaagataggatagacttaa 22438092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 32019161 - 32019271
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaag 224  Q
    ||||| ||||||||| |||||||||||||| || ||||||||| ||||| || || ||  ||| | |||| ||| | ||||| |||||| ||||||||||    
T  32019161 aaaaaatattcaaaatagattcaatagaggagacaatacctgacggagccttaaaaaaagaaagagcataaacaggcagagacgataggacagacttaag 32019260  T
Q  225 gagaaccaagc 235  Q
     | ||||||||    
T  32019261 taaaaccaagc 32019271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 588283 - 588356
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| ||||||||||| || | ||| |||| | |||||||||||||||| |||| | ||||||||    
T  588283 aaaaattattcaatagagattcaatggaagagattatacataatggagctttgaagaaacaaagagcatagaca 588356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 19506775 - 19506847
Alignment:
Q  126 aaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    |||||||||||| | ||||||||| || | ||| ||||||||||||||||| |||||| ||| | ||||||||    
T  19506775 aaaattattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagaca 19506847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 208
Target Start/End: Complemental strand, 35122052 - 35121969
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaag 208  Q
    ||||||||||||| | ||||||||| || | ||| |||||||| |||||||| |||||| ||| | |||||||| | |||||||    
T  35122052 aaaaattattcaacaaagattcaatggaagagattatacctgaaggagctttaaagaaggaaagagcatagacaggcagagaag 35121969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 8249627 - 8249685
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaag 183  Q
    |||||||||| |||| |||||||||||||| ||| |||||||| ||||| |||| ||||    
T  8249627 aaaaattatttaaaatagattcaatagaggagatgatacctgagggagccttgacgaag 8249685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 34481740 - 34481782
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaag 183  Q
    |||||||||||||| ||| |||||||||| |||||||||||||    
T  34481740 agattcaatagaggagattatacctgatgaagctttgaagaag 34481782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 265
Target Start/End: Original strand, 2682584 - 2682657
Alignment:
Q  193 tagacatgaagagaagatagggcagacttaaggagaaccaagcaaccacca-aagataaatttgtacttttcca 265  Q
    |||||||| |||||||| | | ||||||||||||||| ||||| ||||||| || | |||||| ||||||||||    
T  2682584 tagacatgcagagaagacatgacagacttaaggagaatcaagcgaccaccataaaacaaatttctacttttcca 2682657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 38358243 - 38358300
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    ||||||||||||| | ||||||||| || | ||| ||||||| |||||||||||||||    
T  38358243 aaaaattattcaataaagattcaatggaagagattatacctgttggagctttgaagaa 38358300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 21409052 - 21409137
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaaa 245  Q
    ||||||||||| ||| |||||||| |||||||||||||| ||||||| || ||| ||||||||||||||||||  | |||||||||    
T  21409052 atacctgatggtgctctgaagaaggaaaaaacatagacaggaagagaggacaggacagacttaaggagaaccagacgaccaccaaa 21409137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 245
Target Start/End: Complemental strand, 22191111 - 22191026
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaaa 245  Q
    ||||||||||| ||| |||||||| ||||| |||||||| |||||||||| | | ||||||||||||||||||  | |||||||||    
T  22191111 atacctgatggtgctctgaagaaggaaaaagcatagacaggaagagaagacaagacagacttaaggagaaccagacgaccaccaaa 22191026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 20796436 - 20796519
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaag 208  Q
    ||||||||||||| | ||||||||| || | ||| ||||||||||||||||| |||||| ||| | |||||||| ||| |||||    
T  20796436 aaaaattattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagacaggaaaagaag 20796519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 5497880 - 5497982
Alignment:
Q  143 attcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccacc 242  Q
    |||||||||||| ||| |||||||||||||||||||||||| |||   |||||||| | | ||| |  ||| |||| || || |||||||||| ||||||    
T  5497880 attcaatagaggagattatacctgatggagctttgaagaaggaaattgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgaccacc 5497979  T
Q  243 aaa 245  Q
    |||    
T  5497980 aaa 5497982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 33260055 - 33259993
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||||||||  ||| |||||||| ||||||||||||||| ||| | ||||||||    
T  33260055 aaaagagattcaatagagaagatgatacctgagggagctttgaagaaggaaagagcatagaca 33259993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 33280214 - 33280152
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||||||||  ||| |||||||| ||||||||||||||| ||| | ||||||||    
T  33280214 aaaagagattcaatagagaagatgatacctgagggagctttgaagaaggaaagagcatagaca 33280152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 28358702 - 28358777
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagc 235  Q
    |||||||| ||||||||||||||| ||| | ||||||||||||| || | |||| || ||||||| |||| |||||    
T  28358702 atacctgacggagctttgaagaaggaaagagcatagacatgaagcgatgttaggacaaacttaagaagaatcaagc 28358777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 33014890 - 33014937
Alignment:
Q  67 tacaaataaactcccaatcaacccaagtaattttcatgtgatcctcac 114  Q
    |||||||| |||| ||||||||||||||||||||| | ||||||||||    
T  33014890 tacaaatagactctcaatcaacccaagtaattttcttatgatcctcac 33014937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 23450991 - 23450937
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaa 179  Q
    |||||||||| |||||||||||||||||||  || |||||||| ||||| |||||    
T  23450991 aaaaattattaaaaagagattcaatagaggaaatgatacctgacggagccttgaa 23450937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 3074555 - 3074640
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaaa 245  Q
    ||||||||||||||| |||||||| |||   |||||||||||||||| || |||  |  ||||||||||||||  | |||||||||    
T  3074555 atacctgatggagctctgaagaaggaaagggcatagacatgaagagaggacaggaaaaccttaaggagaaccagacgaccaccaaa 3074640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 7396084 - 7396011
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    |||||||||| || | ||||||||  || | ||| |||||||||||||||||||||||| ||| | ||||||||    
T  7396084 aaaaattatttaataaagattcaacggaagagattatacctgatggagctttgaagaaggaaagatcatagaca 7396011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 39431062 - 39431135
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| ||||||||||||||||| || ||| ||| | ||||||||    
T  39431062 aaaaattattcaacaaagattcaatggaagagattatacctgatggagctttaaataaggaaagagcatagaca 39431135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 45271052 - 45271125
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaa 233  Q
    |||||||| ||||| ||||||||| ||| | |||||||| ||||||| |  | | |||||||||||||||||||    
T  45271052 atacctgacggagccttgaagaaggaaagagcatagacaggaagagaggtcaagacagacttaaggagaaccaa 45271125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 32352656 - 32352556
Alignment:
Q  145 tcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaa 244  Q
    |||||||||| ||| ||||||| |||||||||||||||| |||   |||||||| | ||||| |  | | |||| || || |||||||||| ||||||||    
T  32352656 tcaatagaggagattatacctgctggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 32352557  T
Q  245 a 245  Q
    |    
T  32352556 a 32352556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 48072770 - 48072670
Alignment:
Q  145 tcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaa 244  Q
    |||||||||| ||| ||||||| |||||||||||||||| |||   |||||||| | ||||| |  | | |||| || || |||||||||| ||||||||    
T  48072770 tcaatagaggagattatacctgctggagctttgaagaaggaaagcgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 48072671  T
Q  245 a 245  Q
    |    
T  48072670 a 48072670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 20797894 - 20797988
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaac 230  Q
    |||||||| |||||||| |  ||||||||||| ||||||||||||||| ||||| |||||||| |||| || |  || |||||||||||||||||    
T  20797894 aaaagagaatcaatagaagcaataatacctgagggagctttgaagaaggaaaaagcatagacaggaagcgaggtcagtgcagacttaaggagaac 20797988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 44888715 - 44888800
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaaa 245  Q
    ||||||||||| ||| |||||||| ||||| |||||||| ||||||| || | | ||||||||||||||||||  | |||||||||    
T  44888715 atacctgatggtgctctgaagaaggaaaaagcatagacaggaagagaggacaagacagacttaaggagaaccagacgaccaccaaa 44888800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 45968137 - 45968189
Alignment:
Q  127 aaattattcaaaagagattcaatagaggggataatacctgatggagctttgaa 179  Q
    |||||||| |||| |||||||||||||| || |||||||||||||||||||||    
T  45968137 aaattatttaaaatagattcaatagaggagacaatacctgatggagctttgaa 45968189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 52907406 - 52907348
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaag 183  Q
    |||||||||| || | |||||||||||| | ||| ||||||||||||||||||||||||    
T  52907406 aaaaattattaaacatagattcaatagaagagattatacctgatggagctttgaagaag 52907348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 15481122 - 15481065
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    ||||||||||||| | ||||||||| || | ||| |||||||||||||||||||||||    
T  15481122 aaaaattattcaataaagattcaatggaagagattatacctgatggagctttgaagaa 15481065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Original strand, 20367335 - 20367395
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacataga 196  Q
    |||||||||||| |||||| ||| |||||||| ||||||||||||||| |||  |||||||    
T  20367335 aaaagagattcattagaggagatgatacctgagggagctttgaagaaggaaatgacataga 20367395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 1709707 - 1709645
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    |||||||| |||||||| |  ||||||||| ||||||||||||||||| ||| | ||||||||    
T  1709707 aaaagagaatcaatagaagcaataataccttatggagctttgaagaaggaaagagcatagaca 1709645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 8948372 - 8948310
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    |||||||||| |||||||  ||| |||||||| ||||||||||||||| ||| | ||||||||    
T  8948372 aaaagagatttaatagagtcgatgatacctgagggagctttgaagaaggaaatagcatagaca 8948310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 11584854 - 11584964
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaag 224  Q
    |||||||| | |||| ||||||||| |||| ||| |||||||  ||||||||||| ||  ||| | | |||||||  |  ||||||||| ||||||||||    
T  11584854 aaaaattaattaaaatagattcaatggaggagattatacctgcgggagctttgaaaaaagaaagagcgtagacatacaatgaagataggacagacttaag 11584953  T
Q  225 gagaaccaagc 235  Q
    ||||| |||||    
T  11584954 gagaatcaagc 11584964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 17914453 - 17914547
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaac 230  Q
    |||| ||||||||||||||  || |||||||  ||||||||||||||| ||| || ||||||  ||||||| || | | |||||||||| |||||    
T  17914453 aaaatagattcaatagaggaaatgatacctgcgggagctttgaagaaggaaagaaaatagaccggaagagaggacaagacagacttaagaagaac 17914547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 14863820 - 14863747
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| |||||| |||||||||| |||||| ||| | ||||||||    
T  14863820 aaaaattattcaacaaagattcaatggaagagattatacctaatggagctttaaagaaggaaagagcatagaca 14863747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 24926049 - 24925992
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    |||||||||| || | ||||||||| || | ||| |||||||||||||||||||||||    
T  24926049 aaaaattatttaataaagattcaatggaagagattatacctgatggagctttgaagaa 24925992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 36709685 - 36709742
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    ||||||||||||| | ||||||||| || | ||| ||||||| |||||||||||||||    
T  36709685 aaaaattattcaataaagattcaatggaagagattatacctgttggagctttgaagaa 36709742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 43121069 - 43120965
Alignment:
Q  96 attttcatgtgatcctcactctcaaccccaaaaa--ttattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacat 193  Q
    |||||| | |||||||||||| || ||| |||||  ||||| || | ||||||||| || | ||| |||||| ||||||||||||||||| ||||  |||    
T  43121069 attttcctatgatcctcactcccaccccaaaaaaatttattaaacaaagattcaatggaagagattatacctaatggagctttgaagaaggaaaacgcat 43120970  T
Q  194 agaca 198  Q
    |||||    
T  43120969 agaca 43120965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 245
Target Start/End: Complemental strand, 6175825 - 6175721
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaacca 240  Q
    |||||||||||||| ||| ||||||| ||||| |||||||||| |||   |||||||| | ||||| |  | | |||| || || |||||||||| ||||    
T  6175825 agattcaatagaggagattatacctgttggagttttgaagaaggaaagtgcatagacaggcagagatgtcaagacagatttgagtagaaccaagcgacca 6175726  T
Q  241 ccaaa 245  Q
    |||||    
T  6175725 ccaaa 6175721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 21739851 - 21739779
Alignment:
Q  126 aaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    |||||||||||| | ||||||||| || | ||| ||| ||||||||||||| |||||| ||| | ||||||||    
T  21739851 aaaattattcaacaaagattcaatggaagagattataactgatggagctttaaagaaggaaagagcatagaca 21739779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 50545019 - 50545091
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagac 197  Q
    |||||||||| || | ||||||||| || | ||| |||||||||||| ||||||||||| ||||  |||||||    
T  50545019 aaaaattattaaataaagattcaatggaagagattatacctgatggacctttgaagaaggaaaacgcatagac 50545091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 8065625 - 8065552
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| |||||||||||||||||||||||| ||||| ||||||||    
T  8065625 aaaaattattcaataaagattcaatggaagagattatacctgatggagctttgaagaaggaaaaagcatagaca 8065552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 44028577 - 44028504
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    |||||||| ||||||||||||||||||| | ||| |||| ||||||||| ||||||||| ||| | ||||||||    
T  44028577 aaaaattaatcaaaagagattcaatagaagagattatacatgatggagccttgaagaaggaaagagcatagaca 44028504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 13551374 - 13551478
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaacca 240  Q
    |||||||||||||| ||| |||||||||||||||||||||||| |||   |||||||| | | ||| |  ||| |||| || || |||||||||| ||||    
T  13551374 agattcaatagaggagattatacctgatggagctttgaagaaggaaagtgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgacca 13551473  T
Q  241 ccaaa 245  Q
    |||||    
T  13551474 ccaaa 13551478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 203
Target Start/End: Complemental strand, 10289419 - 10289352
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaag 203  Q
    ||||||||||||||||||| ||| |||| ||| ||||||||||||||| ||| | |||||||| ||||    
T  10289419 aaaagagattcaatagaggcgatgatacttgagggagctttgaagaaggaaagagcatagacaggaag 10289352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 39116370 - 39116308
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| ||| ||| | ||||||||    
T  39116370 aaaagagattcaatagaggagacaatacctgatggagccttgaaaaaggaaagagcatagaca 39116308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 24738743 - 24738626
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaag 224  Q
    ||||||||||||||| |||||||||||||| || || |||||| ||||| || || ||  ||| | |||| ||| | | ||| |||||| ||||||||||    
T  24738743 aaaaattattcaaaatagattcaatagaggagacaacacctgacggagccttaaaaaaagaaagagcataaacaggcatagacgataggacagacttaag 24738644  T
Q  225 gagaaccaagcaaccacc 242  Q
     | |||||||| ||||||    
T  24738643 taaaaccaagcgaccacc 24738626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 25380758 - 25380701
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    |||| |||||||| | |||||||||||| | ||| |||||||||||||||||||||||    
T  25380758 aaaatttattcaataaagattcaatagaagagattatacctgatggagctttgaagaa 25380701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 35488614 - 35488687
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| |||||||| |||||||| |||||| ||||| ||||||||    
T  35488614 aaaaattattcaataaagattcaatggaagagattatacctgaaggagctttaaagaaggaaaaagcatagaca 35488687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 21579830 - 21579882
Alignment:
Q  127 aaattattcaaaagagattcaatagaggggataatacctgatggagctttgaa 179  Q
    |||||||| |||| |||||||||||||| || ||||||| |||||||||||||    
T  21579830 aaattatttaaaatagattcaatagaggagacaatacctaatggagctttgaa 21579882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 28399914 - 28399857
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    ||||||||||||| | ||||||||| || | ||| ||||||| |||||||||||||||    
T  28399914 aaaaattattcaataaagattcaatggaagagattatacctgctggagctttgaagaa 28399857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 32191832 - 32191889
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    |||||||||| ||||||||||||| ||| | | | |||||||| ||||||||||||||    
T  32191832 aaaaattatttaaaagagattcaacagaagaggttatacctgaaggagctttgaagaa 32191889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 44940487 - 44940548
Alignment:
Q  205 gaagatagggcagacttaaggagaaccaagcaaccacc-aaagataaatttgtacttttcca 265  Q
    ||||| ||| ||||||||||||||| ||||| ||||||  ||||||||||| ||||||||||    
T  44940487 gaagacaggacagacttaaggagaatcaagcgaccaccgtaagataaatttctacttttcca 44940548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 265
Target Start/End: Complemental strand, 3153205 - 3153042
Alignment:
Q  105 tgatcctcactctcaaccccaaaaa--ttattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaa 202  Q
    |||||||||||| || ||| |||||  ||| | |||| ||||||||| || | ||| |||||||  ||||||||||| ||  |||   | |||||| | |    
T  3153205 tgatcctcactcccaccccaaaaaaatttaattaaaatagattcaatggaagagattatacctgcgggagctttgaaaaaagaaagggcgtagacaggca 3153106  T
Q  203 gagaagatagggcagacttaaggagaaccaagcaaccacc-aaagataaatttgtacttttcca 265  Q
    | ||||| ||| ||||||||||||||| ||||| | ||||  ||||||||||| ||||||||||    
T  3153105 gcgaagacaggacagacttaaggagaatcaagcgatcaccgtaagataaatttctacttttcca 3153042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 37942207 - 37942109
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaag 234  Q
    ||||||||||||||| | | ||||||||| || || |||||||||||| |||  ||||||||| | | ||||||||||| | |||| ||||||||||||    
T  37942207 aaaagagattcaatataagagataatacccgacggggctttgaagaaggaaatgacatagacaggtaaagaagatagggaaaactttaggagaaccaag 37942109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 17056340 - 17056425
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaaa 245  Q
    ||||||||||| ||| |||||||| ||||| |||||||| ||||||| || | | ||||||||||||||||||  | |||||||||    
T  17056340 atacctgatggtgctctgaagaaggaaaaagcatagacaggaagagaggacaagacagacttaaggagaaccagacgaccaccaaa 17056425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 242
Target Start/End: Complemental strand, 27853808 - 27853691
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaag 224  Q
    ||||||||||||||| |||||||||||||| || ||||||||| ||||| || || ||  ||| | |||| ||| | ||||| |||||| ||||||| ||    
T  27853808 aaaaattattcaaaatagattcaatagaggagacaatacctgacggagccttaaaaaaagaaagagcataaacaggcagagacgataggacagacttgag 27853709  T
Q  225 gagaaccaagcaaccacc 242  Q
     | |||||||| ||||||    
T  27853708 taaaaccaagcgaccacc 27853691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 245
Target Start/End: Complemental strand, 28740299 - 28740179
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaag 224  Q
    ||||| |||| |||| |||||||||||| ||||| |||||| | ||||||||||||||| ||| | |||| ||| | |||||||| | | |||| |||||    
T  28740299 aaaaaatatttaaaatagattcaatagatgggattatacctaagggagctttgaagaaggaaagagcataaacaggcagagaagacatgacagatttaag 28740200  T
Q  225 gagaaccaagcaaccaccaaa 245  Q
    ||||   |||| |||||||||    
T  28740199 gagagttaagcgaccaccaaa 28740179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Original strand, 19735294 - 19735367
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| ||||||||||||||||| |||||| ||| | ||||||||    
T  19735294 aaaaattattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagaca 19735367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 196
Target Start/End: Complemental strand, 33820905 - 33820852
Alignment:
Q  143 attcaatagaggggataatacctgatggagctttgaagaagcaaaaaacataga 196  Q
    ||||||| || | |||||||||||||||||||||||||||| ||| ||||||||    
T  33820905 attcaatggaagagataatacctgatggagctttgaagaaggaaagaacataga 33820852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 136 - 183
Target Start/End: Complemental strand, 34792028 - 34791981
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaag 183  Q
    |||||| |||||||||||| ||| |||||||| |||||||||||||||    
T  34792028 aaaagaaattcaatagaggcgatgatacctgagggagctttgaagaag 34791981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 223
Target Start/End: Original strand, 45871555 - 45871637
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaa 223  Q
    |||||||||||| |  ||||||||||| ||||||||||||||| ||| | |||| ||| | |||||||| ||| || ||||||    
T  45871555 agattcaatagaagaaataatacctgaaggagctttgaagaaggaaagagcataaacaggtagagaagacaggacaaacttaa 45871637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 2820069 - 2820012
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    |||||||||||| | ||| |||||||| || |||||||||||| ||| ||||||||||    
T  2820069 agattcaatagaagagattatacctgacggggctttgaagaaggaaagaacatagaca 2820012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 4164895 - 4164956
Alignment:
Q  205 gaagatagggcagacttaaggagaaccaagcaaccacc-aaagataaatttgtacttttcca 265  Q
    ||||| ||| ||||||||||||||| ||||| ||||||  ||||||||||| ||||||||||    
T  4164895 gaagacaggacagacttaaggagaatcaagcgaccaccgtaagataaatttctacttttcca 4164956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 265
Target Start/End: Original strand, 34207186 - 34207247
Alignment:
Q  205 gaagatagggcagacttaaggagaaccaagcaaccacc-aaagataaatttgtacttttcca 265  Q
    ||||| ||| ||||||||||||||| ||||| ||||||  ||||||||||| ||||||||||    
T  34207186 gaagacaggacagacttaaggagaatcaagcgaccaccgtaagataaatttctacttttcca 34207247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 245
Target Start/End: Original strand, 26206125 - 26206229
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaacca 240  Q
    |||||||||||||| ||| |||||||||||||||||||||||| |||   |||||||| | | ||| |  ||| |||| || || |||||||||| ||||    
T  26206125 agattcaatagaggagattatacctgatggagctttgaagaaggaaagtgcatagacaggcaaagaggtcaggacagatttgagaagaaccaagcgacca 26206224  T
Q  241 ccaaa 245  Q
    |||||    
T  26206225 ccaaa 26206229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 12687105 - 12687043
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||||||||| || |||||||||||||| |||||| ||| ||| | ||||||||    
T  12687105 aaaagagattcaatagaggagacaatacctgatggagttttgaaaaaggaaagagcatagaca 12687043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 160 - 245
Target Start/End: Original strand, 2923641 - 2923726
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaaa 245  Q
    |||||||| ||| ||||||||||| ||||||||||||||   |  ||||| | ||||||||| |||||||||| || |||||||||    
T  2923641 atacctgacggaactttgaagaaggaaaaaacatagacaaacaaggaagacaaggcagactttaggagaaccaggcgaccaccaaa 2923726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 17110488 - 17110395
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaa 229  Q
    |||||||||| |||||||| ||| |||| ||| ||||||||||||||| ||| | |||||||| | ||| |||  |||  ||||||||||||||    
T  17110488 aaaagagattgaatagaggagatgatacttgagggagctttgaagaaggaaatatcatagacagggagaaaagtcaggatagacttaaggagaa 17110395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 183
Target Start/End: Original strand, 15674624 - 15674666
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaag 183  Q
    |||||||||||||| ||| ||||||| ||||||||||||||||    
T  15674624 agattcaatagaggagattatacctgctggagctttgaagaag 15674666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 17605698 - 17605644
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaa 179  Q
    |||||||||| || | |||||||||||| | ||| ||||||||||||||||||||    
T  17605698 aaaaattatttaacaaagattcaatagaagagattatacctgatggagctttgaa 17605644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 1104311 - 1104238
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | |||||||||| | | |||  ||||| ||||||||||||||||| ||| | ||||||||    
T  1104311 aaaaattattcaataaagattcaatataagagattgtacctaatggagctttgaagaaggaaagagcatagaca 1104238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 265
Target Start/End: Complemental strand, 1308031 - 1307890
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaag 224  Q
    |||||||| | |||| ||||||||| || | ||| ||||||| ||||||| |||| ||  |||  || |||||| | || ||||| ||| | ||||||||    
T  1308031 aaaaattaattaaaatagattcaatggaagagattatacctgctggagctctgaaaaaagaaaggacgtagacaggcagtgaagacaggacggacttaag 1307932  T
Q  225 gagaaccaagcaacca-ccaaagataaatttgtacttttcca 265  Q
    ||||| ||||| |||| |  ||||||||||| ||||||||||    
T  1307931 gagaatcaagcgaccatcgtaagataaatttctacttttcca 1307890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 21549623 - 21549680
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    ||||||||||||| | ||||||||| || | ||| ||||||| |||||||||||||||    
T  21549623 aaaaattattcaataaagattcaatggaagagattatacctgttggagctttgaagaa 21549680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Complemental strand, 40434083 - 40434025
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaag 183  Q
    |||||||||| |||| |||||||||||||| ||| |||||||| ||||| |||||||||    
T  40434083 aaaaattatttaaaatagattcaatagaggagatgatacctgagggagccttgaagaag 40434025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 42952895 - 42952822
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagaca 198  Q
    ||||||||||||| | ||||||||| || | ||| ||||||||||||||||| |||||| ||| | ||||||||    
T  42952895 aaaaattattcaacaaagattcaatggaagagattatacctgatggagctttaaagaaggaaagagcatagaca 42952822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 11527253 - 11527195
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacata 194  Q
    |||||| |||||||||||| |||||||| ||| ||||| ||||||||| ||| ||||||    
T  11527253 aaaagatattcaatagaggagataatacatgagggagccttgaagaaggaaataacata 11527195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 206
Target Start/End: Complemental strand, 53486258 - 53486212
Alignment:
Q  160 atacctgatggagctttgaagaagcaaaaaacatagacatgaagaga 206  Q
    |||| ||||||||||||||||||| |||| ||||||||| |||||||    
T  53486258 atacttgatggagctttgaagaaggaaaacacatagacaggaagaga 53486212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 20675827 - 20675868
Alignment:
Q  141 agattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    |||||||||||||| ||| ||||||| |||||||||||||||    
T  20675827 agattcaatagaggagattatacctgctggagctttgaagaa 20675868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 26694704 - 26694761
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaa 182  Q
    ||||||||||||| | ||||||||| || | ||| ||||||| |||||||||||||||    
T  26694704 aaaaattattcaataaagattcaatggaagagattatacctgttggagctttgaagaa 26694761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 271
Target Start/End: Original strand, 17955323 - 17955459
Alignment:
Q  136 aaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagc 235  Q
    |||||||||| |||||||  ||| |||  ||| ||||||||||| ||| |||  ||||| |||  |||||| |  ||| |||||||||||||||| |  |    
T  17955323 aaaagagatttaatagagaagatgatatgtgagggagctttgaataaggaaagtacataaacagaaagagatgtcaggacagacttaaggagaacaagac 17955422  T
Q  236 aaccacc-aaagataaatttgtacttttccagcttga 271  Q
    ||||||| ||||| |||||| | |||||||| |||||    
T  17955423 aaccaccaaaagacaaatttatgcttttccaacttga 17955459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 23872821 - 23872721
Alignment:
Q  145 tcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaa 244  Q
    |||||||||| ||| ||||||| |||||||||||||||| |||   |||||||| | ||||| |  | | |||| || || |||||||||| ||||||||    
T  23872821 tcaatagaggagattatacctgctggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 23872722  T
Q  245 a 245  Q
    |    
T  23872721 a 23872721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 54871988 - 54872076
Alignment:
Q  125 aaaaattattcaaaagagattcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagg 213  Q
    |||||||||| |||| ||||||||||||||  | ||||||||| ||||| ||||| || |||| | |||| ||| |||| || ||||||    
T  54871988 aaaaattattaaaaatagattcaatagaggaaacaatacctgacggagccttgaaaaaacaaagagcataaacaggaagggacgatagg 54872076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 55299417 - 55299517
Alignment:
Q  145 tcaatagaggggataatacctgatggagctttgaagaagcaaaaaacatagacatgaagagaagatagggcagacttaaggagaaccaagcaaccaccaa 244  Q
    |||||||||| ||| ||||||| |||||||||||||||| |||   |||||||| | ||||| |  | | |||| || || |||||||||| ||||||||    
T  55299417 tcaatagaggagattatacctgttggagctttgaagaaggaaagtgcatagacaggcagagaggtcaagacagatttgagtagaaccaagcgaccaccaa 55299516  T
Q  245 a 245  Q
    |    
T  55299517 a 55299517  T

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