View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905A_low_94 (Length: 298)
Name: NF8905A_low_94
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_94 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 1772790 - 1772520
Alignment:
| Q |
13 |
atggacatcaagaaaagaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctttggaaaatgctccttcggaggaagttcaagatgt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1772790 |
atggacatcaagaaaagaaggttgctgaggcagaaacagatacagatacagaggaaaatgctcctt---------------cggaggaagttcaagatgt |
1772706 |
T |
|
| Q |
113 |
atctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1772705 |
atctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtcaaagagattcctgttgaggactctggtaaggaa |
1772606 |
T |
|
| Q |
213 |
aatgacaaggagccatctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaacaacctga |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1772605 |
aatgacaaggagccatctaaagcaactgaacaaccatcaaaggagtcaactgagcaagacgcttcttctggagacaaacaacctga |
1772520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 80 - 196
Target Start/End: Original strand, 2534233 - 2534349
Alignment:
| Q |
80 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattctggtggaggatgtc |
179 |
Q |
| |
|
|||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||| || || |||||||| ||||||| || ||||||| | |
|
|
| T |
2534233 |
ggaaaacgcttcttcagaggaagttcaagatgtatctaaagataatacagaagaaactactgaccccacggataccaaagagattcctgttgaggatgcc |
2534332 |
T |
|
| Q |
180 |
aaagagattcctgttga |
196 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
2534333 |
aaagagattcatgttga |
2534349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 165
Target Start/End: Complemental strand, 2525689 - 2525604
Alignment:
| Q |
80 |
ggaaaatgctccttcggaggaagttcaagatgtatctaaagataattcagaagaaactgctgagcctactgataccaatgagattc |
165 |
Q |
| |
|
||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
2525689 |
ggaaaatgctcattctgaggaaattcaagatgaatctaaagataattcagaagaaacggctgagcctaccgataccaaagagattc |
2525604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University