View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8905A_low_98 (Length: 295)

Name: NF8905A_low_98
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8905A_low_98
NF8905A_low_98
[»] chr3 (1 HSPs)
chr3 (6-295)||(16294352-16294641)


Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 295
Target Start/End: Complemental strand, 16294641 - 16294352
Alignment:
Q  6 gtttggtgttgatgttattgagactcaattcaacttcttcaaactttgcaatttcattcatttgagcttttatcatagacatagctattggtttacacaa 105  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16294641 gtttggtggtgatgttattgagactcaattcaacttcttcaaactttgcaatttcattcatttgagcttttatcatagacatagctattggtgtacacaa 16294542  T
Q  106 caattttgttactatcactaaaagaggatatctgaaagtagctcaaacagctacctttcaagagacataaaaaccattaatgagtggtttccatgttggt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16294541 caattttgttactatcactaaaagaggatatctgaaagtagctcaaacagctacctttcaagagacataaaaaccattaatgagtggtttccatgttggt 16294442  T
Q  206 ggtaataacgttgtttattttacttttctcataaatatatggttcatgttgctgggctgtcatacacattacaacctcgtctttccttga 295  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16294441 ggtaataacgttgtttattttacttttctcataaatataaggttcatgttgctgggctgtcatacacattacaacctcgtctttccttga 16294352  T

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