View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905A_low_99 (Length: 294)
Name: NF8905A_low_99
Description: NF8905A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905A_low_99 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 207
Target Start/End: Original strand, 13890458 - 13890658
Alignment:
| Q |
7 |
tttggtgttgcaagcagaccttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttactgat |
106 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||| |||||| ||| |
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| T |
13890458 |
tttggtgttgcaagcagaccttgtttgttcaaaagaggttgttaaatgcattcaaagtgagaggcatgcacttcttcaattcaaggctggtcttaccgat |
13890557 |
T |
|
| Q |
107 |
ccatatggcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgaccttc |
206 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||| |
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| T |
13890558 |
gaatatggcatgttgtcatcttggacgacggcagattgctgcgaatggtatggaattggttgcagcaacctcactggtcatgtacttaagctcgaccttc |
13890657 |
T |
|
| Q |
207 |
a |
207 |
Q |
| |
|
| |
|
|
| T |
13890658 |
a |
13890658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 14087238 - 14087035
Alignment:
| Q |
7 |
tttggtgttgcaagcagacc---ttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttact |
103 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||| |||||| |
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| T |
14087238 |
tttggtgttgcaagtagaccagcttgtttgttcaaaagaggttgttaggtgcatacaaagtgagaggacagcacttcttcaatttaaggctgcccttact |
14087139 |
T |
|
| Q |
104 |
gatccatatggcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgacc |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||| | |||||||| |||| |||||||||||| |||||||||||||| ||| |
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| T |
14087138 |
gatccatatggcatgctgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcaacaacctcactggccatgtacttatgctcaacc |
14087039 |
T |
|
| Q |
204 |
ttca |
207 |
Q |
| |
|
|||| |
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|
| T |
14087038 |
ttca |
14087035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 13872601 - 13872802
Alignment:
| Q |
6 |
gtttggtgttgcaagcagaccttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttactga |
105 |
Q |
| |
|
|||||| |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||||| ||||||| ||| |||||||||| |||| ||| |
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| T |
13872601 |
gtttggcgttgcaagcagaccttgtttgttcaaaagaggttgttaggtgcatacaaagtgagagacaggcactccttaaattcaaggctggccttattga |
13872700 |
T |
|
| Q |
106 |
tccatatggcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgacctt |
205 |
Q |
| |
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| |||||||| ||||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||| || ||| |
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|
| T |
13872701 |
tgtgaatggcatgttgtcatcttggacaacggcagattgctgccaatggtatggaattcgttgcagcaacctcactggccatgtacttatgctcgatctt |
13872800 |
T |
|
| Q |
206 |
ca |
207 |
Q |
| |
|
|| |
|
|
| T |
13872801 |
ca |
13872802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 7 - 207
Target Start/End: Complemental strand, 14113089 - 14112886
Alignment:
| Q |
7 |
tttggtgttgcaagcagaccttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttactgat |
106 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||| ||||| |||||||||||| |||||||||| ||||||||||| ||||||||| |
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|
| T |
14113089 |
tttggtgttgcaagcagaccttgtttgttcaaaagaggctgttaggtgcatacaaagtgagaggcaggcacttctacaattcaaggctggccttactgat |
14112990 |
T |
|
| Q |
107 |
ccatatg---gcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgacc |
203 |
Q |
| |
|
|||| ||||||||||||||||| || | |||||||||||||||| | |||||||| ||||||||| ||||| |||||||| ||||||| |||| |
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| T |
14112989 |
gtgtatgacaacatgctgtcatcttggaggacagaagattgctgccaatggaagggaattggttgcagcaacgtcacttgtcatgtaattatgctcgacc |
14112890 |
T |
|
| Q |
204 |
ttca |
207 |
Q |
| |
|
|||| |
|
|
| T |
14112889 |
ttca |
14112886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 13470373 - 13470574
Alignment:
| Q |
6 |
gtttggtgttgcaagcagaccttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttactga |
105 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||| | ||||| || ||||| |||||||||||| |||||||||||||||||||||| |||| ||| |
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|
| T |
13470373 |
gtttggtgttgcaagcatattttgtttgttcaaaaaaagttgtcaggtgcatacaaagtgagaggcaggcacttcttcaattcaaggctgcccttattga |
13470472 |
T |
|
| Q |
106 |
tccatatggcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgacctt |
205 |
Q |
| |
|
| ||||||||| ||||||||||||||| | |||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||||| ||||| |
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|
| T |
13470473 |
tgactatggcatgttgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcagcaacctcactgatcatgtaattatgctcaacctt |
13470572 |
T |
|
| Q |
206 |
ca |
207 |
Q |
| |
|
|| |
|
|
| T |
13470573 |
ca |
13470574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 14017656 - 14017452
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttac |
102 |
Q |
| |
|
|||||||||| |||||||||| || ||| ||||||||||||||||||||| |||||||||||||||||||||||||| || |||||| ||| |
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|
| T |
14017656 |
gtttggtgtttcaagcagaccaacttatttgttcaaaagaggttgttagatgtattcaaagtgagaggaaggcacttctacagttcaagtatggccttgt |
14017557 |
T |
|
| Q |
103 |
tgatccatatggcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgac |
202 |
Q |
| |
|
|||| | ||||||| ||||||||||||| | | |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| || |
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|
| T |
14017556 |
tgatgagtttggcatgttgtcatcttggacaacagaagattgctgcgaatggtatggaattggttgcagcaacctcactggtcatgtacttatgctcaac |
14017457 |
T |
|
| Q |
203 |
cttca |
207 |
Q |
| |
|
||||| |
|
|
| T |
14017456 |
cttca |
14017452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 14027697 - 14027493
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttac |
102 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||| ||| |
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|
| T |
14027697 |
gtttggtgttgcaagcagaccagtttgtttgttcaaaagaggttgttagatgcattcaaagtgagaggcaggcactcctgcaattcaagtttggccttgt |
14027598 |
T |
|
| Q |
103 |
tgatccatatggcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgac |
202 |
Q |
| |
|
||| || ||||||| ||||||||||||| | | |||||||||| |||||||||||||||| |||||||| ||||||| |||||||||||||| ||| |
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|
| T |
14027597 |
tgacaaatttggcatgttgtcatcttggacaacagaagattgctgcgaatggtatggaattggttgcagcaatatcactggccatgtacttatgctcgac |
14027498 |
T |
|
| Q |
203 |
cttca |
207 |
Q |
| |
|
||||| |
|
|
| T |
14027497 |
cttca |
14027493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 6 - 207
Target Start/End: Original strand, 13860464 - 13860671
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttac |
102 |
Q |
| |
|
|||||||||||||||| |||| |||||| |||||||||| ||||||| ||||| |||||||||||| |||| ||||| ||||||||||| ||||| |
|
|
| T |
13860464 |
gtttggtgttgcaagctgaccagcttgtttgttcaaaagagtttgttaggtgcatacaaagtgagaggcaggcgcttctacaattcaaggctggccttac |
13860563 |
T |
|
| Q |
103 |
tgatccatatggca---tgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgctt |
199 |
Q |
| |
|
|||| |||| || |||||||||||||||||| | |||||||||||||||| | |||||||| ||||||||| | |||||||||||| ||||||| |
|
|
| T |
13860564 |
tgatgtgtatgacaacatgctgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcagcaacgtaactggtcatgtaattatgctc |
13860663 |
T |
|
| Q |
200 |
gaccttca |
207 |
Q |
| |
|
|||||||| |
|
|
| T |
13860664 |
gaccttca |
13860671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 207
Target Start/End: Complemental strand, 13943571 - 13943387
Alignment:
| Q |
26 |
cttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttactgatccatatggca---tgctgt |
122 |
Q |
| |
|
||||||| |||||||||||||||||| ||||| |||||||||||| | |||||||| |||||||| || |||| |||| ||||| || |||||| |
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|
| T |
13943571 |
cttgtttgttcaaaagaggttgttaggtgcatacaaagtgagaggcaagcacttctacaattcaaagctggccttattgatgaatatgacaacatgctgt |
13943472 |
T |
|
| Q |
123 |
catcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgaccttca |
207 |
Q |
| |
|
|||||||||||| | |||||||||||||||| | |||||||| ||||||||| |||||||||||||| ||||||| |||||||| |
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|
| T |
13943471 |
catcttggacgacagaagattgctgccaatggaagggaattggttgcagcaacgtcactggtcatgtaattatgctcgaccttca |
13943387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 6 - 93
Target Start/End: Complemental strand, 14000530 - 14000443
Alignment:
| Q |
6 |
gtttggtgttgcaagcagaccttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggc |
93 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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|
| T |
14000530 |
gtttggtgttgcaagcagactttgtttattcaaaggaggttgttagatgcatacaaagtgagaggaaagcacttcttcaattcaaggc |
14000443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 207
Target Start/End: Complemental strand, 14049484 - 14049280
Alignment:
| Q |
6 |
gtttggtgttgcaagcagacc---ttgtttattcaaaagaggttgttagatgcattcaaagtgagaggaaggcacttcttcaattcaaggcacttcttac |
102 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| || ||||| ||||||||||| |||||||||| ||||||||| | |||| |
|
|
| T |
14049484 |
gtttggtgttgcaagcagaccagcttgtttgctcaaaagaggttgtcaggtgcatacaaagtgagagacaggcacttctgcaattcaagtctggccttat |
14049385 |
T |
|
| Q |
103 |
tgatccatatggcatgctgtcatcttggacgatggcagattgctgccaatggtatggaattggctgcagcaacctcactggtcatgtacttatgcttgac |
202 |
Q |
| |
|
|||| || || |||| |||||| |||||| | | ||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| || |
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|
| T |
14049384 |
tgatgaatttgacatgttgtcattttggacaactgaagattgctgccaatggtatggaattggttgcagcaatatcactggccatgtacttatgctcgat |
14049285 |
T |
|
| Q |
203 |
cttca |
207 |
Q |
| |
|
||||| |
|
|
| T |
14049284 |
cttca |
14049280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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