View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905_high_3 (Length: 247)
Name: NF8905_high_3
Description: NF8905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905_high_3 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
| [»] scaffold0264 (1 HSPs) |
| | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0074 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 47462 - 47692
Alignment:
| Q |
1 |
atgacaattgcatggttcgatactccaatgagtctttcttttccaagttttatgcatatccttgggttatacagtataggtatgccaacgtctcaaacac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47462 |
atgacaattgcatggttcgatactccaatgagtctttcttttccaaggtttatgcatatccttgggttatacagtataggtatgccaacgtctcaaacac |
47561 |
T |
|
| Q |
101 |
gaaaagcttcatgcctttattgttttcaaccgtgtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaaagaagtttgcaacaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
47562 |
gaaaagcttcatgcctttattgttttcaaccgggtacgaaactgcagatgaagcagcacgtccacttattggagatataaaaaagaagtttgcaacaaaa |
47661 |
T |
|
| Q |
201 |
gaagcacgagtttcgaaaaaacagacccttt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
47662 |
gaagcacgagtttcgaaaaaacagacccttt |
47692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 16474 - 16251
Alignment:
| Q |
6 |
aattgcatggttcgatactccaatgagtctttcttttccaagttttatgcatatccttgggttatacagtataggtatgccaacgtctcaaacacgaaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| | || ||||||| | ||||| || ||||||||||||||||||||||||| |
|
|
| T |
16474 |
aattgcatggttcgatactccaatgagtctttcttttccactgtttctacaagtccttggtatgcacagtgtacatatgccaacgtctcaaacacgaaaa |
16375 |
T |
|
| Q |
106 |
gcttcatgcctttattgttttcaaccgtgtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaaagaagtttgcaacaaaagaagc |
205 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16374 |
gcttcatgcctttattgttttcaacctggtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaaagaagtttgcaacaaaagaagc |
16275 |
T |
|
| Q |
206 |
acgagtttcgaaaaaacagaccct |
229 |
Q |
| |
|
||||||||||||||| |||||||| |
|
|
| T |
16274 |
acgagtttcgaaaaatcagaccct |
16251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 95 - 231
Target Start/End: Complemental strand, 21972317 - 21972184
Alignment:
| Q |
95 |
aaacacgaaaagcttcatgcctttattgttttcaaccgtgtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaaagaagtttgca |
194 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| || | ||||||||| ||||||||| |||| |||| ||| |||| | || ||||||||| |
|
|
| T |
21972317 |
aaacacgaaaagcttcgtgtctttattgttttcaaccatgaatcgaactgcagacgaagcagcaagtccgcttagtggtgaca---agaacaagtttgca |
21972221 |
T |
|
| Q |
195 |
acaaaagaagcacgagtttcgaaaaaacagacccttt |
231 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
21972220 |
acaaaagaagcacgagtttcggaaaatcagacccttt |
21972184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 20205767 - 20205620
Alignment:
| Q |
84 |
gccaacgtctcaaacacgaaaagcttcatgcctttattgttttcaaccgtgtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaa |
183 |
Q |
| |
|
||||| ||| |||||||||| ||||| || ||||||||||| ||||| || | ||||| ||||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
20205767 |
gccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacg |
20205668 |
T |
|
| Q |
184 |
agaagtttgcaacaaaagaagcacgagtttcgaaaaaacagacccttt |
231 |
Q |
| |
|
||||||||||||| |||||||||| || |||| |||| |||||||||| |
|
|
| T |
20205667 |
agaagtttgcaaccaaagaagcacaagattcggaaaatcagacccttt |
20205620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 84 - 231
Target Start/End: Complemental strand, 22099790 - 22099643
Alignment:
| Q |
84 |
gccaacgtctcaaacacgaaaagcttcatgcctttattgttttcaaccgtgtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaa |
183 |
Q |
| |
|
||||| ||| |||||||||| ||||| || ||||||||||| ||||| || | ||||| ||||||||||||| ||||||||||||| |||| ||| |
|
|
| T |
22099790 |
gccaatgtcacaaacacgaagagctttgtgtctttattgtttacaaccatgaatcgaactgtagatgaagcagcaagtccacttattggtgacaaaaacg |
22099691 |
T |
|
| Q |
184 |
agaagtttgcaacaaaagaagcacgagtttcgaaaaaacagacccttt |
231 |
Q |
| |
|
||||||||||||| |||||||||| || |||| |||| |||||||||| |
|
|
| T |
22099690 |
agaagtttgcaaccaaagaagcacaagattcggaaaatcagacccttt |
22099643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 90 - 206
Target Start/End: Complemental strand, 20086441 - 20086325
Alignment:
| Q |
90 |
gtctcaaacacgaaaagcttcatgcctttattgttttcaaccgtgtacgaaactgcagatgaagcagcacgtccacttattggagacataaaaaagaagt |
189 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || || | |||||||||| ||||||||| ||||||||| | |||| || ||||||| |
|
|
| T |
20086441 |
gtctcaaacacagaaagcttcatgcctttattgttttcgacgatggataaaactgcagaggaagcagcaggtccacttactactgacaacaacaagaagt |
20086342 |
T |
|
| Q |
190 |
ttgcaacaaaagaagca |
206 |
Q |
| |
|
|||| |||||||||||| |
|
|
| T |
20086341 |
ttgccacaaaagaagca |
20086325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 22204725 - 22204803
Alignment:
| Q |
90 |
gtctcaaacacgaaaagcttcatgcctttattgttttcaaccgtgtacgaaactgcagatgaagcagcacgtccactta |
168 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| || || | |||||||||| ||||||||| ||||||||| |
|
|
| T |
22204725 |
gtctcaaacacagaaagcttcatgcctttattgttttcgacgatgaataaaactgcagaggaagcagcaggtccactta |
22204803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 45
Target Start/End: Complemental strand, 20086525 - 20086486
Alignment:
| Q |
6 |
aattgcatggttcgatactccaatgagtctttcttttcca |
45 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20086525 |
aattgcatggttcgatactccagcgagtctttcttttcca |
20086486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 4970 - 5094
Alignment:
| Q |
6 |
aattgcatggttcgatactccaatgagtctttcttttccaagttttatgcatatccttgggttatacagtataggtatgccaacgtctcaaacacgaaaa |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || || || |||||| | || || || || || ||||||||||||||||||| || |
|
|
| T |
4970 |
aattgcatggttcgatactccaatgagtctttcttttccactgttgatacaaatccttcgtttgtaatgtgtaagtccgccaacgtctcaaacacgacaa |
5069 |
T |
|
| Q |
106 |
gcttcatgcctttattgttttcaac |
130 |
Q |
| |
|
||||| ||||||||||| |||||| |
|
|
| T |
5070 |
gcttcgagcctttattgtcttcaac |
5094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University