View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905_low_1 (Length: 482)
Name: NF8905_low_1
Description: NF8905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Complemental strand, 43357600 - 43357132
Alignment:
| Q |
1 |
atatatcaataacttgcaagaagaatataatatagggtgcaaaaccacagaggtcaaatatagtaaaacagcagtgtcatggggccataataacaaacac |
100 |
Q |
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| T |
43357600 |
atatatcaataacttgcaagaagaatataatatagggtgcaaaaccacagaagtcaaatatagtaaaacagcagtgtcatggggccataataaca----c |
43357505 |
T |
|
| Q |
101 |
ttcaaaagaaggatgcgaccttactcaaatttccaaaaccagggtccaattgaattattatcataattacctcataacttttgctttctacgttttcttc |
200 |
Q |
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| T |
43357504 |
ttcaaaagaaggatgcgaccttactcaaatttccaaaaccagggtccaattgaattattatcataattacctcataacttttgctttctacgttttcttc |
43357405 |
T |
|
| Q |
201 |
gttttataacggtcctcattatgacatttcaggaccagtactgcactcaatcctcgtatatataaacacctttgtgtaatgttcctcctcattcaacatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43357404 |
gttttataacggtcctcattatgacatttcaggaccagtactgcactcaatcctcgtatatataaacacctttgtgtaatgttcctcctcattcaacatc |
43357305 |
T |
|
| Q |
301 |
aacaatggatgtcagagaaaactcaaaggaactgcagcaactgcaaacctttgctaaacaagaacaatgcaacatctaccccatgaatttcaatgtgcta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
43357304 |
aacaatggatgtcagagaaaactcaaaggaactgcagcaactgcaaacctttgctaaacaagaacaatacaacatctaccccatgaatttcaatgtgcta |
43357205 |
T |
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| Q |
401 |
gagaatacaaaaggcaacactaacagatgtaattctgcattctttgtaccaggtgaaggatattctgatgtcc |
473 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
43357204 |
gagaatacaaaaggcaacactaacagatgtaattctgtattctttgtaccaggtgaaggatattctgatgtcc |
43357132 |
T |
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