View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905_low_11 (Length: 224)
Name: NF8905_low_11
Description: NF8905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905_low_11 |
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| [»] scaffold0586 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 32716761 - 32716951
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32716761 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgctttttt-gaacgcttacttaactcaaggtagcataacacaattgtcatca |
32716859 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgatt |
192 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32716860 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcctttcacgtatttccatcaaatgtgtcatgatt |
32716951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 10638850 - 10638660
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10638850 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgctttttt-gaacgcttacttaactcaaggtagcataacacaattgtcatca |
10638752 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgatt |
192 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
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| T |
10638751 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcctttcacgtatttccatcaaatgtgacatgatt |
10638660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 26662651 - 26662461
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26662651 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgctttttt-gaacgcttacttaactcaaggtagcataacacaattgtcatca |
26662553 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgatt |
192 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26662552 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcctttcacgtatttccatcaaatgtgtcatgatt |
26662461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0586 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold0586
Description:
Target: scaffold0586; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 3270 - 3080
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3270 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcactttttt-gaacgcttacttaactcaaggtagcataacacaattgtcatca |
3172 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgatt |
192 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3171 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcctttcacgtatttccatcaaatgtgtcatgatt |
3080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 22902910 - 22902720
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22902910 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgctttttt-gaacgcttacttaactcaaggtagcataacacaattgtcatca |
22902812 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgatt |
192 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
22902811 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcttttcacgtatttccatcaaatgtgtcatgatt |
22902720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 13341357 - 13341546
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13341357 |
ggacttctctaactaaacttctttcataaaaattccatgacctttttcgctttttt-gaacgcttacttaactcaaggtagcataacacaattgtcatca |
13341455 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgat |
191 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
13341456 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcctgtcacgcatttccatcaaatgtgtcatgat |
13341546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 13330442 - 13330631
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13330442 |
ggacttctctaactaaacttctttcataaaaattccatgacctttttcgctttttca-aacgcttacttaactcaaggtagcataacacaattgtcatca |
13330540 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgat |
191 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
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|
| T |
13330541 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcctgtcacgcatttccatcaaatgtgtcatgat |
13330631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 191
Target Start/End: Original strand, 5670890 - 5671079
Alignment:
| Q |
1 |
ggacttctctaattaaacttctttcataaaaatcccatgacctttttcgcnnnnnnngaacgcttacttaactcaaggtagcataacacaattgtcatca |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5670890 |
ggacttctctaactaaacttctttcataaaaattccatgacctttttcgctttttca-aacgcttacttaactcaaggtagcataacacaattgtcatca |
5670988 |
T |
|
| Q |
101 |
acataaagtaattcaacatcttcatatatatcataaacattgctataannnnnnncttcctttcacgtatttccatcaaatgtgtcatgat |
191 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
5670989 |
acataaagtaattcaacatctccatatatatcataaacattgctataatttttttcttcctgtcacgcatttccatcaaatgtgtcatgat |
5671079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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