View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8905_low_2 (Length: 437)
Name: NF8905_low_2
Description: NF8905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905_low_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 421
Target Start/End: Complemental strand, 3404543 - 3404124
Alignment:
| Q |
1 |
acctaatacaataggatctcaaaaactttgaatacaagaaagtggattattaggtttttgtttctccattctttttaaataaaccaatatcatgataaac |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3404543 |
acctaatacaataggatctcaaacactttgaatacaagaaagtggattattaggtttttgtttctccattctttttaaataaaccaatatcatgataaac |
3404444 |
T |
|
| Q |
101 |
acttgacggggtcgatcacctttaagggatctatcannnnnnnccattaaagataatattattctgttccaaccaaatacatcaaaaattacgtgagaca |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
3404443 |
acttgacggggtcgatcacctt-aagggatctatcatttttttccattaaagataatattattctgttccaaccaaatacataaaaaattatgtgagaca |
3404345 |
T |
|
| Q |
201 |
catcctttcttccacaacatatgtctatccattccaatcagttaaacatacttttccaaatttcctaagtccttggacatgttgtaaacaagtgactagc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3404344 |
catcctttcttccacaacatatgtctatccattccaatcagttaaacatacttttccaaatttcctaagtccttggacatgttgtaaacaagtgactagc |
3404245 |
T |
|
| Q |
301 |
tgattaataattttagtttccatgactatatcgaattcttttacaaagtatgagatcaagattcacaacaataccattattgaactaacaccattcaact |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3404244 |
tgattaataattttagtttccatgactatatcgaattcttttacaaagtatgagatcaagattcacaacaataccattattgaactaacaccattcaact |
3404145 |
T |
|
| Q |
401 |
tatctaaaccgttgggtatat |
421 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
3404144 |
tatctaaaccgttgggtatat |
3404124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University