View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8905_low_5 (Length: 386)
Name: NF8905_low_5
Description: NF8905
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8905_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 75 - 368
Target Start/End: Complemental strand, 31857499 - 31857206
Alignment:
| Q |
75 |
tttcaaatctcaatgttatcatctctttatatttcaatattatccnnnnnnnattatatttcaattttaatgttatcccttggtatcttcctttctattt |
174 |
Q |
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| T |
31857499 |
tttcaaatctgaatgttatcatctctttatatttcaatattatcctttctttattatatttcaattttaatgttatccctttgtatctctctttctattt |
31857400 |
T |
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| Q |
175 |
gattacatcctcgtacaaagtcaacctacacacgcaacacaaattaataagaaaatccccatggggccatggcctttgcttgcactaaaaacaaaatact |
274 |
Q |
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| T |
31857399 |
gattacatcctcgtacaaagtcaacctacacacgcaacacaaattaataagaaaatccccatggggccatggcctttgcttgcactaaaaacaaaatact |
31857300 |
T |
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| Q |
275 |
aattttcaattcatggtacnnnnnnnntttacatttgttacactgagaaatttaaaatgattaaggtttgttaagcttttgatctatgtcaaac |
368 |
Q |
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| T |
31857299 |
aattttcaattcatggtacaaaacaaattaacatttgttacactgagaaatttaaaatgattaaggtttgttaagcttttgatctatgtcaaac |
31857206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 31857545 - 31857494
Alignment:
| Q |
5 |
tttcgtatctcaaatcttaaacgatatttttatcgttttcattcaaatttcaa |
57 |
Q |
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| T |
31857545 |
tttcgtatctcaaatcttagacgac-tttttatcgttttctttcaaatttcaa |
31857494 |
T |
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