View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_high_3 (Length: 467)
Name: NF8906_high_3
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 457
Target Start/End: Complemental strand, 530937 - 530481
Alignment:
| Q |
1 |
catgaaactcataaagtggtttctccatcaaccggaagaccttaggaggaaaaatgatgcaagctgaatctgatgtctttttcagggtcttcacatttgt |
100 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
530937 |
catgaaactcatgaagtggtttctccatcaaccggaagaccttaggaggaaaaatgatgcaagctgaatctgatgtctttttcagggtcttcacatttgt |
530838 |
T |
|
| Q |
101 |
aattttatccttatccataaacaagggtgtcaattccgagagatcattcactgtaaagtaaatacaggatgtatcaacttctggaatgtcaatttcatta |
200 |
Q |
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| T |
530837 |
aattttatccttatccataaacaagggtgtcaattccgagagatcattcactgtaaagtaaatacaggatgtatcaacttctggaatgtcaatttcatta |
530738 |
T |
|
| Q |
201 |
tgcctctcatcctcaacaacttgccacaatcgcacaattccatcttcgccggcactagcaagatactggccgtcaggactaaatttcatggtaaaaattg |
300 |
Q |
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| T |
530737 |
tgcctctcatcctcaacaacttgccacaatcgcacaattccatcttcgccggcactagcaagatactggccgtcaggactaaatttcatggtaaaaattg |
530638 |
T |
|
| Q |
301 |
gaccttcgtgtgcttgaatatcttgtcccatataaagagctgaaagttccttcctttgtttcttgcattgacgaaccttaactcgctgaatcctacaatc |
400 |
Q |
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| T |
530637 |
gaccttcgtgtgcttgaatatcttgtcccatataaagagctgaaagttccttcctttgtttcttgcattgacgaaccttaactcgctgaatcctacaatc |
530538 |
T |
|
| Q |
401 |
cgaaaatgaaacaccgtcttcgtgtttcctgttatcagattctccttgatgtccatc |
457 |
Q |
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| T |
530537 |
cgaaaatgaaacaccgtcttcgtgtttcctgttatcagattctccttgttgtacatc |
530481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 41861998 - 41862378
Alignment:
| Q |
17 |
tggtttctccatcaaccggaagaccttaggaggaaaaatgatgcaagctgaatctgatgtctttttcagggtcttcacatttgtaattttatccttatcc |
116 |
Q |
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|||||| |||| ||||||||||| |||||| || |||| | ||||||||||||| |||||| ||| | |||||| | || ||| ||||||||| |
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| T |
41861998 |
tggtttttccaacaaccggaagatcttaggcgggaaaacaacacaagctgaatctgcagtctttctcatgctcttcagttgaccaagtttttccttatcc |
41862097 |
T |
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| Q |
117 |
ataaacaagggtgtcaattccgagagatcattcactgtaaagtaaatacaggatgtatcaacttctggaatgtcaatttcattatgcctctcatcctcaa |
216 |
Q |
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|||||||| |||||||||| ||||||| |||||||||||||||||| | || | |||| ||||||||||| |||||||||| || || ||||||| |
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| T |
41862098 |
ataaacaatggtgtcaattgagagagattattcactgtaaagtaaatgcttgaggggtcaatttctggaatgtgaatttcattacatctatcctcctcaa |
41862197 |
T |
|
| Q |
217 |
caacttgccacaatcgcacaattccatcttcgccggcactagcaagatactggccgtcaggactaaatttcatggtaaaaattggaccttcgtgtgcttg |
316 |
Q |
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| T |
41862198 |
ccacttgccacacccgaacaaccccgtcttcaccacctgtggccagatactgcccatcaggactaaatttcatggtcaaaattgcaccttcgtgcgcttg |
41862297 |
T |
|
| Q |
317 |
aatatcttgtcccatataaagagctgaaagttccttcctttgtttcttgcattgacgaaccttaactcgctgaatcctaca |
397 |
Q |
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||||||||| | || ||||| | ||||||||||||| ||| ||| | |||||||| ||||| ||| ||||| |||||| |
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| T |
41862298 |
aatatcttgcctcaagtaaagtgatgaaagttccttcattttcttcctacattgacggacctttactttctgaagcctaca |
41862378 |
T |
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