View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_high_8 (Length: 344)
Name: NF8906_high_8
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 7317434 - 7317640
Alignment:
| Q |
1 |
gtacatatatatgaatgaatcatgtgaattgtgtaaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtc |
100 |
Q |
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| T |
7317434 |
gtacatatatatgaatgaatcatgtgaattgtgtaaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtc |
7317533 |
T |
|
| Q |
101 |
ataaacatccatgtttggcatacgagcatcaatcaacattacatcaaaacagtcctttctttccatcgaattcaaggcatcagaagctgtattgcatttg |
200 |
Q |
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| T |
7317534 |
ataaacatccatgtttggcatatgagcatcaatcaacattacatcaaaacagtcctttctttccatcgaattcaaggcatcagaagctgtattgcatttg |
7317633 |
T |
|
| Q |
201 |
gtaactg |
207 |
Q |
| |
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||||||| |
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| T |
7317634 |
gtaactg |
7317640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 31 - 207
Target Start/End: Complemental strand, 7244105 - 7243929
Alignment:
| Q |
31 |
gtgtaaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtcataaacatccatgtttggcatacgagcatc |
130 |
Q |
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| T |
7244105 |
gtgtaaagttgaataaattcttactaatgacaggaatgttgagttgtagggtaacatgttggacaaagtcataagcatccatgtttggcatatgaggatc |
7244006 |
T |
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| Q |
131 |
aatcaacattacatcaaaacagtcctttctttccatcgaattcaaggcatcagaagctgtattgcatttggtaactg |
207 |
Q |
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| T |
7244005 |
aatcaacattacatcgaaacagtcctttctttccaacaagttcaaggcatcagaagctgtgttacatttggtaactg |
7243929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 7 - 187
Target Start/End: Complemental strand, 7218623 - 7218443
Alignment:
| Q |
7 |
atatatgaatgaatcatgtgaattgtgtaaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtcataaac |
106 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||| | |
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| T |
7218623 |
atatatgaatgaatcatgtgaattgtgtaaagttgaataaattcttactaatgacaggaatgttgagttgtaggacaacactttggacaaagtcataagc |
7218524 |
T |
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| Q |
107 |
atccatgtttggcatacgagcatcaatcaacattacatcaaaacagtcctttctttccatcgaattcaaggcatcagaagc |
187 |
Q |
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| T |
7218523 |
atccatgtttggcatatgaggatcaatcaacattacatcgaaacagtcctttctttccaacatgttgaaggcatcagaagc |
7218443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 7324256 - 7324429
Alignment:
| Q |
34 |
taaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtcataaacatccatgtttggcatacgagcatcaat |
133 |
Q |
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| T |
7324256 |
taaagttgaagaaattcttactaataacaggaatgttgagttgtagggtagcattttggacaaagtcatagacatccatgttcggcatatgagcatcaat |
7324355 |
T |
|
| Q |
134 |
caacattacatcaaaacagtcctttctttccatcgaattcaaggcatcagaagctgtattgcatttggtaactg |
207 |
Q |
| |
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||||||||||||| |||||||||||||||||| | | | ||| ||||||||||||| ||||||||||||||||| |
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| T |
7324356 |
caacattacatcataacagtcctttctttccaacaagtacaaagcatcagaagctgaattgcatttggtaactg |
7324429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 32 - 206
Target Start/End: Complemental strand, 8162314 - 8162139
Alignment:
| Q |
32 |
tgtaaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtcataaacatccatgtttggcatacgagcatca |
131 |
Q |
| |
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||||||||| || ||||||||||| || ||||||| | ||| |||||| ||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
8162314 |
tgtaaagttaaataaattcttactgatagcaggaatctgaagttgtagggaaacatgttggacaaagtcacaggcatccatgtttggcatacgagcatca |
8162215 |
T |
|
| Q |
132 |
atcaacattacatcaaaacagtcctttctt-tccatcgaattcaaggcatcagaagctgtattgcatttggtaact |
206 |
Q |
| |
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|||||||||||||| |||||| |||| || |||| | ||| ||| ||||||||||| ||| |||||||||||| |
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| T |
8162214 |
atcaacattacatcgaaacagcacttttttgtccaacaaatccaatgcatcagaagccacattacatttggtaact |
8162139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 328
Target Start/End: Original strand, 7317734 - 7317765
Alignment:
| Q |
297 |
ttgaataatgtgcaattaactaagtaacaaac |
328 |
Q |
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| T |
7317734 |
ttgaataatgtgcaattaactaagtaacaaac |
7317765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 34 - 207
Target Start/End: Original strand, 22766295 - 22766468
Alignment:
| Q |
34 |
taaagttgaagaaattcttactaatgacaggaattttgagtagtagggtaacatgttggacaaagtcataaacatccatgtttggcatacgagcatcaat |
133 |
Q |
| |
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||||||||||||||| ||||||||| |||||||| |||||| | |||| ||||||| ||||| ||||| ||||||||||||||||| |||||||||| |
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| T |
22766295 |
taaagttgaagaaatacttactaataacaggaatattgagttgaccggtagcatgttgaacaaaatcataggcatccatgtttggcatatgagcatcaat |
22766394 |
T |
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| Q |
134 |
caacattacatcaaaacagtcctttctttccatcgaattcaaggcatcagaagctgtattgcatttggtaactg |
207 |
Q |
| |
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||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||||||||||||||| |
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| T |
22766395 |
taacattacatcaaaacagtcctttctttccaacaagttcaaggcttcagaagctgtattgcatttggtaactg |
22766468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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