View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8906_low_18 (Length: 432)

Name: NF8906_low_18
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8906_low_18
NF8906_low_18
[»] chr4 (30 HSPs)
chr4 (232-415)||(39912560-39912743)
chr4 (36-150)||(38698034-38698148)
chr4 (37-151)||(28589776-28589890)
chr4 (37-135)||(28590912-28591010)
chr4 (36-150)||(38695539-38695653)
chr4 (35-153)||(40723220-40723339)
chr4 (35-150)||(40724849-40724962)
chr4 (17-136)||(53435740-53435859)
chr4 (11-148)||(53432060-53432197)
chr4 (67-133)||(2162622-2162688)
chr4 (35-149)||(13533265-13533379)
chr4 (68-133)||(14524888-14524954)
chr4 (67-120)||(668412-668465)
chr4 (72-133)||(3921173-3921234)
chr4 (81-133)||(1190243-1190295)
chr4 (78-120)||(669693-669735)
chr4 (36-89)||(13531754-13531807)
chr4 (80-149)||(20625554-20625623)
chr4 (36-133)||(52963582-52963679)
chr4 (78-134)||(20620151-20620207)
chr4 (81-132)||(40792765-40792816)
chr4 (67-149)||(7053177-7053259)
chr4 (17-111)||(13165531-13165624)
chr4 (95-136)||(11115048-11115089)
chr4 (81-133)||(390230-390282)
chr4 (82-134)||(1588141-1588193)
chr4 (67-123)||(1829776-1829832)
chr4 (35-147)||(34326729-34326840)
chr4 (81-133)||(44501531-44501583)
chr4 (82-134)||(54865117-54865169)
[»] chr1 (21 HSPs)
chr1 (11-154)||(46318598-46318741)
chr1 (36-150)||(15746772-15746886)
chr1 (35-148)||(48097036-48097149)
chr1 (33-150)||(15743272-15743389)
chr1 (17-149)||(46467143-46467275)
chr1 (46-148)||(42244629-42244731)
chr1 (17-154)||(46468706-46468843)
chr1 (67-133)||(836230-836296)
chr1 (67-133)||(51042379-51042445)
chr1 (35-120)||(30535674-30535759)
chr1 (73-133)||(835258-835318)
chr1 (65-149)||(20064173-20064257)
chr1 (82-130)||(34352008-34352056)
chr1 (91-134)||(18818988-18819031)
chr1 (65-136)||(20069922-20069993)
chr1 (63-105)||(8027292-8027334)
chr1 (67-133)||(15071355-15071421)
chr1 (67-129)||(16123304-16123366)
chr1 (67-133)||(24499692-24499758)
chr1 (95-160)||(49619887-49619952)
chr1 (35-111)||(49802900-49802976)
[»] chr8 (26 HSPs)
chr8 (36-149)||(41743621-41743734)
chr8 (17-148)||(38696306-38696437)
chr8 (36-151)||(38697012-38697127)
chr8 (35-150)||(42877615-42877730)
chr8 (35-136)||(45394977-45395078)
chr8 (73-149)||(42878859-42878935)
chr8 (67-133)||(28418819-28418885)
chr8 (67-133)||(28420211-28420277)
chr8 (67-149)||(45437519-45437601)
chr8 (36-135)||(14840905-14841004)
chr8 (73-120)||(45396060-45396107)
chr8 (67-133)||(17702312-17702378)
chr8 (34-132)||(32798536-32798634)
chr8 (35-136)||(211605-211706)
chr8 (35-136)||(240550-240651)
chr8 (35-136)||(725228-725329)
chr8 (35-136)||(793905-794006)
chr8 (82-123)||(30787652-30787693)
chr8 (72-120)||(28735014-28735062)
chr8 (81-133)||(32797151-32797203)
chr8 (35-110)||(4810505-4810580)
chr8 (81-132)||(30786690-30786741)
chr8 (81-132)||(32693844-32693895)
chr8 (34-132)||(42872193-42872291)
chr8 (67-120)||(34504677-34504730)
chr8 (67-124)||(42870835-42870892)
[»] chr2 (19 HSPs)
chr2 (11-148)||(35903506-35903643)
chr2 (35-149)||(35904748-35904862)
chr2 (67-150)||(34147132-34147215)
chr2 (67-150)||(2276277-2276360)
chr2 (33-151)||(34148363-34148481)
chr2 (34-134)||(37956961-37957061)
chr2 (35-146)||(33995948-33996058)
chr2 (67-135)||(2277506-2277574)
chr2 (62-149)||(35061348-35061434)
chr2 (71-133)||(11547672-11547734)
chr2 (78-150)||(35061267-35061339)
chr2 (72-135)||(34512825-34512888)
chr2 (62-120)||(30749325-30749383)
chr2 (73-150)||(34513596-34513673)
chr2 (11-145)||(7753507-7753640)
chr2 (81-132)||(28561382-28561433)
chr2 (81-150)||(9474103-9474172)
chr2 (81-133)||(11315946-11315998)
chr2 (81-125)||(43033103-43033147)
[»] chr7 (14 HSPs)
chr7 (42-148)||(35105-35211)
chr7 (11-149)||(46201129-46201266)
chr7 (35-148)||(46202288-46202401)
chr7 (42-150)||(27750-27858)
chr7 (37-154)||(38539663-38539780)
chr7 (11-136)||(25533198-25533323)
chr7 (35-149)||(9662241-9662355)
chr7 (67-133)||(32602946-32603012)
chr7 (36-89)||(9660730-9660783)
chr7 (67-124)||(33779121-33779178)
chr7 (91-133)||(10942313-10942355)
chr7 (82-132)||(32256447-32256497)
chr7 (78-152)||(41328213-41328287)
chr7 (36-133)||(30333298-30333395)
[»] scaffold2071 (1 HSPs)
scaffold2071 (35-148)||(686-799)
[»] scaffold0011 (2 HSPs)
scaffold0011 (33-150)||(128594-128711)
scaffold0011 (35-150)||(127429-127544)
[»] scaffold1251 (1 HSPs)
scaffold1251 (67-150)||(1122-1205)
[»] chr6 (10 HSPs)
chr6 (37-136)||(16208534-16208633)
chr6 (11-131)||(7310291-7310410)
chr6 (74-153)||(7308491-7308570)
chr6 (67-133)||(233601-233667)
chr6 (81-133)||(232189-232241)
chr6 (81-133)||(6452562-6452614)
chr6 (63-135)||(12780538-12780610)
chr6 (63-135)||(12784717-12784789)
chr6 (82-134)||(35037145-35037197)
chr6 (83-132)||(7311777-7311826)
[»] chr5 (20 HSPs)
chr5 (35-150)||(1010369-1010484)
chr5 (35-146)||(8521255-8521366)
chr5 (34-149)||(8523750-8523865)
chr5 (33-149)||(32759051-32759167)
chr5 (35-148)||(9169584-9169698)
chr5 (67-145)||(32757826-32757904)
chr5 (42-153)||(26047806-26047917)
chr5 (36-148)||(1009182-1009294)
chr5 (82-133)||(34899003-34899054)
chr5 (80-151)||(23334017-23334088)
chr5 (65-132)||(30857814-30857881)
chr5 (78-136)||(23325922-23325980)
chr5 (81-154)||(10978330-10978403)
chr5 (67-135)||(11846308-11846376)
chr5 (81-133)||(24503197-24503249)
chr5 (81-124)||(22049187-22049230)
chr5 (11-134)||(22308780-22308903)
chr5 (81-132)||(24509087-24509138)
chr5 (82-133)||(34894162-34894213)
chr5 (67-149)||(11796566-11796648)
[»] chr3 (23 HSPs)
chr3 (34-150)||(3455629-3455745)
chr3 (11-145)||(20288205-20288339)
chr3 (36-130)||(28909611-28909705)
chr3 (67-133)||(37735319-37735385)
chr3 (35-136)||(43174711-43174812)
chr3 (67-133)||(18442265-18442331)
chr3 (67-133)||(19487339-19487405)
chr3 (67-133)||(50809434-50809500)
chr3 (67-133)||(50810871-50810937)
chr3 (67-133)||(50864927-50864993)
chr3 (67-133)||(50866362-50866428)
chr3 (67-124)||(42684898-42684955)
chr3 (81-133)||(3208497-3208549)
chr3 (95-151)||(20336693-20336749)
chr3 (81-132)||(3209982-3210033)
chr3 (72-150)||(43173882-43173960)
chr3 (81-130)||(12108034-12108083)
chr3 (81-122)||(53194921-53194962)
chr3 (67-112)||(55328342-55328387)
chr3 (67-107)||(5123383-5123423)
chr3 (81-133)||(38247527-38247579)
chr3 (81-133)||(40244200-40244252)
chr3 (85-133)||(41544675-41544723)
[»] scaffold0078 (1 HSPs)
scaffold0078 (67-129)||(18829-18891)
[»] scaffold0118 (1 HSPs)
scaffold0118 (67-133)||(43612-43678)
[»] scaffold0031 (1 HSPs)
scaffold0031 (81-132)||(123983-124034)
[»] scaffold0114 (1 HSPs)
scaffold0114 (78-154)||(38532-38608)


Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 232 - 415
Target Start/End: Original strand, 39912560 - 39912743
Alignment:
Q  232 gtaactgtcacacgacacccaaaacatggttgctttagacattttatcacaaacagtgctttctctccataattaagcggaaaagattctggctatgggt 331  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39912560 gtaactgtcacacgacacccaaaacatgggtgctttagacattttatcacaaacagtgctttctctccataattaagcggaaaagattctggttatgggt 39912659  T
Q  332 ctcacagaaaccattatttccttcctccttgacactgcatccaaaccatggaagcccaccttccaaaaaactttctttcctctt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39912660 ctcacagaaaccattatttccttcctccttgacactgcatccaaaccatggaagcccaccttccaaaaaactttctttcctctt 39912743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 38698034 - 38698148
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||| || |||||||||||||||||||||    
T  38698034 gatttttttgacagacggagacacagttaaaggaccaaaacatgacttttattagatatgggaccaaaatgaaaattggaaattatttaaaggaccaaat 38698133  T
Q  136 gccctcttaagccta 150  Q
    | ||| |||||||||    
T  38698134 gacctattaagccta 38698148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 151
Target Start/End: Complemental strand, 28589890 - 28589776
Alignment:
Q  37 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 136  Q
    ||||||||||| |||||||||| | |||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  28589890 atttatttgaccgacggagacataattaaagtaccaaaacataagttttaatacttatgggaccaaaatgaaaactgaaaattatttaagggatcaaatg 28589791  T
Q  137 ccctcttaagcctat 151  Q
     ||| |||| |||||    
T  28589790 acctattaaacctat 28589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 28590912 - 28591010
Alignment:
Q  37 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||||||||||  ||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||    
T  28590912 atttatttgaccaacgaagacacaattaaaggaccaaaacatgagttttattatttatgggaccaaaatgaaagctggaaattatttaagggaccaaat 28591010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 38695653 - 38695539
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    ||||| ||||| ||||||||| ||||||||||||| ||||||||| ||||||||  ||||||| ||||||||||| |||||||||||||| |||||||||    
T  38695653 gatttttttgatagacggagagacagttaaaggaccaaaacatgatttttattagatatgggatcaaaatgaaaattgaaaattatttaagggaccaaat 38695554  T
Q  136 gccctcttaagccta 150  Q
      ||| |||||||||    
T  38695553 aacctattaagccta 38695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 153
Target Start/End: Complemental strand, 40723339 - 40723220
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactg-aaaattatttaaaggaccaa 133  Q
    ||||||||||||| |||||||| | |  ||| |||| |||||||||||||||||| |||||||||||||||||||| || ||||||| |||  |||||||    
T  40723339 ggatttatttgaccgacggagataaacctaagggaccaaaacatgagttttattagttatgggaccaaaatgaaaattgcaaaattaattaggggaccaa 40723240  T
Q  134 atgccctcttaagcctatat 153  Q
    ||| ||| ||||||| ||||    
T  40723239 atgacctattaagccaatat 40723220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 40724849 - 40724962
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||||||||  ||||||||| | |||| |||| |||||||||||||||||| |  ||||| |||||| ||||||| |||||| |||| ||||||||    
T  40724849 ggatttatttgactaacggagacaaacttaagggaccaaaacatgagttttattagt--tgggatcaaaataaaaactgcaaattaattaagggaccaaa 40724946  T
Q  135 tgccctcttaagccta 150  Q
    || ||| |||||||||    
T  40724947 tgacctattaagccta 40724962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 53435740 - 53435859
Alignment:
Q  17 gttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaa 116  Q
    |||||||||| | | ||||||||||||||||  ||||||  | | || | || | |||||||||||||||||||||||||||||||||||||||||  ||    
T  53435740 gttaaacttaaccgtcaaggatttatttgaccaacggaggtaaacttgaggggccaaaacatgagttttattacttatgggaccaaaatgaaaacttgaa 53435839  T
Q  117 attatttaaaggaccaaatg 136  Q
    |||| |||| ||| ||||||    
T  53435840 attaattaagggatcaaatg 53435859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 53432197 - 53432060
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| | | || |||||||||||||  ||| || || | || | |||| ||||||| |||||||||||||||||||||||||||||||    
T  53432197 tttggggttaaacttaaccgtcagggatttatttgaccaacgaaggcaaacttgagggaccaaaacataagttttattacttatgggaccaaaatgaaaa 53432098  T
Q  111 ctgaaaattatttaaaggaccaaatgccctcttaagcc 148  Q
    ||  |||||| |||| ||| |||| | ||| |||||||    
T  53432097 cttgaaattaattaagggatcaaacgacctattaagcc 53432060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 2162688 - 2162622
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||| |||| ||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||    
T  2162688 ggaccaaaatatgagttttattagttatgggactaaaatgaaaactgaaaattaattagaggaccaa 2162622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 13533265 - 13533379
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||| ||| |||||| || || |||||||||  |||||| ||| |||||||||    
T  13533265 ggatttatttgaccgacggagacaaacgtgagggaccaaaacatgagtttttttagttatggaactaagatgaaaacttgaaattaattagaggaccaaa 13533364  T
Q  135 tgccctcttaagcct 149  Q
    || ||| ||||||||    
T  13533365 tgacctattaagcct 13533379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 68 - 133
Target Start/End: Original strand, 14524888 - 14524954
Alignment:
Q  68 gactaaaacatgagttttattacttatgggaccaaaatg-aaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||  |||||| ||||||||||||    
T  14524888 gactaaaacatgagttttattaattatgggatcaaaatgaaaaacttgaaattaattaaaggaccaa 14524954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 668465 - 668412
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 120  Q
    |||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  668465 ggaccaaaacgtgagttttattagttatgagaccaaaatgaaaactgaaaatta 668412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 3921173 - 3921234
Alignment:
Q  72 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||| || ||||||||| ||||| |||||||||||||||||||||||| |||| |||||||    
T  3921173 aaaacttgggttttattatttatgagaccaaaatgaaaactgaaaattaattaagggaccaa 3921234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 1190243 - 1190295
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| |||||||||||||||||||||| |||||||||| | |||||||    
T  1190243 gttttattaattatgggaccaaaatgaaaacttaaaattatttgagggaccaa 1190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 120
Target Start/End: Original strand, 669693 - 669735
Alignment:
Q  78 tgagttttattacttatgggaccaaaatgaaaactgaaaatta 120  Q
    |||||||||||| |||||||||||||||||||| |||||||||    
T  669693 tgagttttattaattatgggaccaaaatgaaaattgaaaatta 669735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 13531807 - 13531754
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttatta 89  Q
    ||||| |||||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  13531807 gatttttttgaccgacggagagacaattaaaggaccaaaacatgagttttatta 13531754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 20625554 - 20625623
Alignment:
Q  80 agttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||||||  |||||||||||||||||| ||||| | ||||||||| ||||||||||| ||  ||||||||    
T  20625554 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 20625623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 52963679 - 52963582
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||||||| ||||||| | | || | |||| |||||||  | ||||||| || || ||||||||||||||||  |||||||||| ||||||||    
T  52963679 gatttatttgacaaacggagaaaaacttgagggaccaaaacatacgatttattaattgtgagaccaaaatgaaaacttgaaattatttagaggaccaa 52963582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 20620207 - 20620151
Alignment:
Q  78 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||||  |||||||||||||||||| ||||| | ||||||||| |||||||||    
T  20620207 tgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaa 20620151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 40792816 - 40792765
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||| || ||||||||||||||||||| ||||||| ||| |||||||    
T  40792816 gttttattaattgtgggaccaaaatgaaaacttaaaattaattagaggacca 40792765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 7053259 - 7053177
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||| |||| || |||||||||| |||||| ||||||||| ||||||||||||| |||  |||  ||||| ||| ||||||||    
T  7053259 ggacaaaaatataagttttattaattatggaaccaaaatgtaaactgaaaattaattaggggaaaaaatgacctattaagcct 7053177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 13165624 - 13165531
Alignment:
Q  17 gttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaac 111  Q
    |||||||||| ||| ||||||||||||||||| ||||||  | || | |||||| |||||   | |||||||| ||| |||||||||||||||||    
T  13165624 gttaaacttaacagtcaaggatttatttgacaaacggaggaaaagatgaaggacgaaaacgccatttttattaatta-gggaccaaaatgaaaac 13165531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 11115048 - 11115089
Alignment:
Q  95 gggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 136  Q
    |||||||||||||||||||||||| | |||| ||||||||||    
T  11115048 gggaccaaaatgaaaactgaaaataagttaagggaccaaatg 11115089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 390282 - 390230
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| || |||||||||||||||||||  ||||||||||  |||||||    
T  390282 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccaa 390230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 1588141 - 1588193
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||| || |||||| |||||||||||| |||||||||| | ||||||||    
T  1588141 ttttattaattgtgggactaaaatgaaaacttaaaattatttgagggaccaaa 1588193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 1829832 - 1829776
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattt 123  Q
    ||||||||| ||  ||||||||| || |||||||||||||||||||  |||||||||    
T  1829832 ggactaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaattattt 1829776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 147
Target Start/End: Complemental strand, 34326840 - 34326729
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||  ||||| |  ||| |||| ||||||| |||||||||| ||||||||  || ||||||| | ||||||| |||  ||||||||    
T  34326840 ggatttatttgaccgacaaagacaaacctaagggaccaaaacataagttttatta-ttatgggattaagatgaaaattaaaaattaattaggggaccaaa 34326742  T
Q  135 tgccctcttaagc 147  Q
    || ||| ||||||    
T  34326741 tgacctattaagc 34326729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 44501583 - 44501531
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| ||||||||||| ||||||||||  ||||||||| | |||||||    
T  44501583 gttttattaattatgggaccagaatgaaaacttgaaattatttgagggaccaa 44501531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 54865169 - 54865117
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||| |||||||||||||||||||||  |||||||  ||| ||||||||    
T  54865169 ttttattaattatgggaccaaaatgaaaacataaaattaaataagggaccaaa 54865117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 154
Target Start/End: Original strand, 46318598 - 46318741
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||| ||| || | |||| ||||||||| |||||||| ||||||||| ||||| ||||    
T  46318598 tttggggttaaacttaacagccaaggatttatttgacagacggagatacaattgagggaccaaaacatgacttttattagttatgggacaaaaatcaaaa 46318697  T
Q  111 ctgaaaattatttaaaggaccaaatgccctcttaagcctatatt 154  Q
    ||  |||||| ||||||||||||||| ||| |||||||||||||    
T  46318698 cttgaaattaattaaaggaccaaatgacctattaagcctatatt 46318741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 36 - 150
Target Start/End: Original strand, 15746772 - 15746886
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||||||||||| |||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||| |||  |||||||||    
T  15746772 gatttatttgactgacggagatacaattaagggaccaaaacatgagttttattacttatgggaccaaaatgaaaattggaaattaattaggggaccaaat 15746871  T
Q  136 gccctcttaagccta 150  Q
    | ||| |||||||||    
T  15746872 gacctattaagccta 15746886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 48097036 - 48097149
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||||||||| |  ||| ||||||||||||||||||||||| ||||||||||||||| |||| || |||||| ||| ||||| |||    
T  48097036 ggatttatttgaccgacggagacaaacctaagggactaaaacatgagttttattagttatgggaccaaaataaaaattggaaattaattagaggactaaa 48097135  T
Q  135 tgccctcttaagcc 148  Q
    || ||| |||||||    
T  48097136 tgacctattaagcc 48097149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 33 - 150
Target Start/End: Complemental strand, 15743389 - 15743272
Alignment:
Q  33 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||||||||| || ||||| ||| | || |||| |||||||||||||||||||||||| ||||||||| |||| || |||||| ||| |||||||    
T  15743389 aaggatttatttgactgatggagatacaatcaagggaccaaaacatgagttttattacttatgagaccaaaataaaaattggaaattaattagaggacca 15743290  T
Q  133 aatgccctcttaagccta 150  Q
    |||  ||| |||||||||    
T  15743289 aataacctattaagccta 15743272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 46467275 - 46467143
Alignment:
Q  17 gttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaa 116  Q
    |||||||||| |||| | |||||||||||||| |||||| || |  | | ||||  ||||||||||||||||| ||||||||||||||||||||||  ||    
T  46467275 gttaaacttaacagcgagggatttatttgacaaacggaggcaaacctgagggaccgaaacatgagttttattagttatgggaccaaaatgaaaacttgaa 46467176  T
Q  117 attatttaaaggaccaaatgccctcttaagcct 149  Q
    |||| |||||||| ||| || ||| ||||||||    
T  46467175 attaattaaaggatcaattgacctattaagcct 46467143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 46 - 148
Target Start/End: Complemental strand, 42244731 - 42244629
Alignment:
Q  46 acagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaa 145  Q
    |||||||||||   | |||| |||| |||||||||||||||||| |||||||| ||||||||||| |  |||||| ||||||||||||||| ||| ||||    
T  42244731 acagacggagatcaacttaagggaccaaaacatgagttttattaattatgggatcaaaatgaaaatttgaaattaattaaaggaccaaatgacctattaa 42244632  T
Q  146 gcc 148  Q
    |||    
T  42244631 gcc 42244629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 154
Target Start/End: Original strand, 46468706 - 46468843
Alignment:
Q  17 gttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaa 116  Q
    |||||||||| ||||   |||||||||||||| || ||| || | || | ||||  ||||||||||||||||| ||||||||||||||| |||| |  ||    
T  46468706 gttaaacttatcagcgtgggatttatttgacaaacagaggcaaacttgatggaccgaaacatgagttttattagttatgggaccaaaataaaaatttgaa 46468805  T
Q  117 attatttaaaggaccaaatgccctcttaagcctatatt 154  Q
    |||| |||||| |||||||| ||| |||||| ||||||    
T  46468806 attaattaaagaaccaaatgacctattaagcttatatt 46468843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 836230 - 836296
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||| |||||||  |||||||| ||||| |||||||||||||||||||||||| ||| ||||||||    
T  836230 ggactgaaacatggattttattagttatgagaccaaaatgaaaactgaaaattaattagaggaccaa 836296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 51042379 - 51042445
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| |||||||||||| || ||||||||||||||||| || |||||| |||| |||||||    
T  51042379 ggactaaaacgtgagttttattaattgtgggaccaaaatgaaaattggaaattaattaagggaccaa 51042445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 120
Target Start/End: Original strand, 30535674 - 30535759
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 120  Q
    |||||||||||||| ||||||  | | || | | |||||||| |  ||||||||| |||||| |||||||||||||||||||||||    
T  30535674 ggatttatttgacaaacggagttagatttgaggaactaaaacgttggttttattaattatggaaccaaaatgaaaactgaaaatta 30535759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 835318 - 835258
Alignment:
Q  73 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||| |||||||||||| ||||| ||||||||||||||||| |||||| |||  |||||||    
T  835318 aaacgtgagttttattagttatgagaccaaaatgaaaactgcaaattaattaggggaccaa 835258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 20064257 - 20064173
Alignment:
Q  65 aaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||||| ||||| || |||||||||  |||||||||||||||||||| | |||||| || | ||||||||||  || ||||||||    
T  20064257 aaggaccaaaacgtgtgttttattagatatgggaccaaaatgaaaacgggaaattaattgagggaccaaatgagctattaagcct 20064173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 34352008 - 34352056
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggac 130  Q
    |||||||| || ||||||||||||||||||| |||||||||||| ||||    
T  34352008 ttttattaattgtgggaccaaaatgaaaacttaaaattatttaagggac 34352056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 134
Target Start/End: Complemental strand, 18819031 - 18818988
Alignment:
Q  91 ttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||    
T  18819031 ttatgggaccataatgaaaactgaaaattaattaaaggatcaaa 18818988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 136
Target Start/End: Original strand, 20069922 - 20069993
Alignment:
Q  65 aaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 136  Q
    |||||| |||||||| |||||||||  |||| ||||||||||||||| | |||||| || | ||||||||||    
T  20069922 aaggaccaaaacatgtgttttattagatatgagaccaaaatgaaaacgggaaattaattgagggaccaaatg 20069993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 8027334 - 8027292
Alignment:
Q  63 taaaggactaaaacatgagttttattacttatgggaccaaaat 105  Q
    |||||||||||||| |||||||||||| ||||| |||||||||    
T  8027334 taaaggactaaaacgtgagttttattaattatgagaccaaaat 8027292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 15071421 - 15071355
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||  ||||||||||  |||||||    
T  15071421 ggaccaaaacatacgttttattaattatgtgaccaaaatgaaaacttgaaattatttaggggaccaa 15071355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 16123366 - 16123304
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaagga 129  Q
    |||||||||| ||| |||||||| || ||| |||||||||||||||  |||||||||| ||||    
T  16123366 ggactaaaacgtgaattttattaattgtggaaccaaaatgaaaactttaaattatttagagga 16123304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 24499692 - 24499758
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||| ||||| |||||||||||| || || ||||||||||||||||  ||||||||||  |||||||    
T  24499692 ggaccaaaacgtgagttttattaattgtgagaccaaaatgaaaacttgaaattatttaggggaccaa 24499758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 160
Target Start/End: Original strand, 49619887 - 49619952
Alignment:
Q  95 gggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatattaaaaga 160  Q
    ||||||||| |||||||||||||| | |||| ||||||||||   | |||||||||| ||||||||    
T  49619887 gggaccaaattgaaaactgaaaataaattaagggaccaaatgatgtattaagcctattttaaaaga 49619952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 49802900 - 49802976
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaac 111  Q
    ||||||||||| || ||||||| | || | | |||||||||| | | |||||||| || ||||||||||||||||||    
T  49802900 ggatttatttggcaaacggagaaaaagatgagggactaaaacgtcatttttattaattgtgggaccaaaatgaaaac 49802976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 41743621 - 41743734
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    ||||| |||||| |||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41743621 gatttttttgaccgacggagaaacaattaaaggaccaaaacataagttttattacttatgggaccaaaatgaaaacttaaaattaattaaaggaccaaat 41743720  T
Q  136 gccctcttaagcct 149  Q
    | ||| ||||||||    
T  41743721 gacctattaagcct 41743734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 38696437 - 38696306
Alignment:
Q  17 gttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaa 116  Q
    ||||||||||  ||| | ||||||||||||| ||||||| || | || | |||| |||||||||||||||||| ||||| |||||||||||||||| |||    
T  38696437 gttaaacttaatagcaagggatttatttgaccgacggaggcaaacttgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttaaa 38696338  T
Q  117 attatttaaaggaccaaatgccctcttaagcc 148  Q
    |||| |||  |||||||||| ||| |||||||    
T  38696337 attaattaggggaccaaatggcctattaagcc 38696306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 36 - 151
Target Start/End: Original strand, 38697012 - 38697127
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||||||||||| ||||||| || |  | |||||  |||||||||||||||||| ||||||||||||||||||||||| |||||| || | |||||||||    
T  38697012 gatttatttgaccgacggaggcaaatgtgaaggatcaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattgagggaccaaat 38697111  T
Q  136 gccctcttaagcctat 151  Q
    |  || ||||||||||    
T  38697112 gagctattaagcctat 38697127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 42877730 - 42877615
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||| ||||| |  | | |||| |||||||||||||||||| ||||| ||||||||||||||||  |||||| ||||  |||||||    
T  42877730 ggatttatttgactgacgaagacaaacgtgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttgaaattaattaagagaccaaa 42877631  T
Q  135 tgccctcttaagccta 150  Q
    |  ||| |||||||||    
T  42877630 taacctattaagccta 42877615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 45395078 - 45394977
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||  ||| |||| ||| ||||   || |||||||||||||||||| |||||||| ||||||||||||| ||||||| |||| ||| ||||    
T  45395078 ggatttatttgatcgacagagagacaattaagtaaccaaaacatgagttttattaattatgggatcaaaatgaaaacttaaaattaattaagggatcaaa 45394979  T
Q  135 tg 136  Q
    ||    
T  45394978 tg 45394977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 149
Target Start/End: Original strand, 42878859 - 42878935
Alignment:
Q  73 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||||||||||| |||| ||||||||||||||||||||||  |||||| |||  |||||||||| ||| ||||||||    
T  42878859 aaacatgagtttcattagttatgggaccaaaatgaaaacttgaaattaattaggggaccaaatgacctattaagcct 42878935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 28418885 - 28418819
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  28418885 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 28418819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 28420211 - 28420277
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  28420211 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 28420277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 149
Target Start/End: Original strand, 45437519 - 45437601
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||  |||||| |||  ||| |||||| ||| ||||||||    
T  45437519 ggaccaaaacatgagttttattaattatgggatcaaaatgaaaacttgaaattaattaggggatcaaatgacctattaagcct 45437601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 36 - 135
Target Start/End: Original strand, 14840905 - 14841004
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    ||||||||||| ||||||||||| |  | | |||| ||||||||| |||||||| |||||| ||||||||||||| |  |||||| | ||| ||||||||    
T  14840905 gatttatttgatagacggagacaaatatgagggaccaaaacatgaattttattagttatggtaccaaaatgaaaatttgaaattaatcaaaagaccaaat 14841004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 45396060 - 45396107
Alignment:
Q  73 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 120  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  45396060 aaacgtgagtttttttagttatgggaccaaaatgaaaactgaaaatta 45396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 17702312 - 17702378
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||| |||||||  ||||||||| |||||||||||||||||||| || |||||| |||| |||||||    
T  17702312 ggaccaaaacataggttttattagttatgggaccaaaatgaaaattggaaattaattaagggaccaa 17702378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 32798536 - 32798634
Alignment:
Q  34 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||||||||| ||||||| | | || | |||||||||  |  ||||||||| || |||||||||||||||||||  ||||||||| | ||||||    
T  32798536 aggatttatttgacaaacggagaaaaaattgagggactaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttgagggacca 32798634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 211706 - 211605
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  211706 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 211607  T
Q  135 tg 136  Q
    ||    
T  211606 tg 211605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 240550 - 240651
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  240550 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 240649  T
Q  135 tg 136  Q
    ||    
T  240650 tg 240651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 136
Target Start/End: Complemental strand, 725329 - 725228
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  725329 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 725230  T
Q  135 tg 136  Q
    ||    
T  725229 tg 725228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 793905 - 794006
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  793905 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 794004  T
Q  135 tg 136  Q
    ||    
T  794005 tg 794006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 30787652 - 30787693
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattattt 123  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  30787652 ttttattaattatgggaccaaaatgaaaacttaaaattattt 30787693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 28735062 - 28735014
Alignment:
Q  72 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 120  Q
    |||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  28735062 aaaacatgagttttattaattatggaaccaaaatgaacacttaaaatta 28735014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 32797203 - 32797151
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| || |||||||||||||||||||  ||||||||||| |||||||    
T  32797203 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaagggaccaa 32797151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 4810580 - 4810505
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||||||||| || ||||||| | | || |||||| |||||||  ||||||||| ||||||||||||||| ||||    
T  4810580 ggatttatttggcaaacggagaaaaatttgaaggaccaaaacatacgttttattaattatgggaccaaaataaaaa 4810505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 30786741 - 30786690
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||| ||||| || ||||||||||||| |||||||||| ||||||||    
T  30786741 gttttattaattatgtgatcaaaatgaaaacttaaaattatttgaaggacca 30786690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 32693895 - 32693844
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||| || ||||||||||||||||||| ||||||| ||| |||||||    
T  32693895 gttttattaattgtgggaccaaaatgaaaacttaaaattaattagaggacca 32693844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 132
Target Start/End: Original strand, 42872193 - 42872291
Alignment:
Q  34 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||||||||| ||||||  | |  | |||||||||||| |  ||||||||  ||||| ||  |||||||||||| |||||||||||| ||||||    
T  42872193 aggatttatttgacaaacggaggaaaaagtgaaggactaaaacgtacgttttattcattatgagattaaaatgaaaacttaaaattatttaagggacca 42872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 120
Target Start/End: Original strand, 34504677 - 34504730
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 120  Q
    |||| |||||||| ||||||||| ||||| ||| ||||| ||||||||||||||    
T  34504677 ggaccaaaacatgtgttttattagttatgagactaaaataaaaactgaaaatta 34504730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 42870892 - 42870835
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattta 124  Q
    |||||||||| |  ||||||||| || |||||||||||||||||||  ||||||||||    
T  42870892 ggactaaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattattta 42870835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 35903643 - 35903506
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| |||||||||||||||||||| |||||||| | | || | |||| ||||||||| |||||||| ||||||||||||||||||||    
T  35903643 tttggggttaaacttaacagccaaggatttatttgactgacggagatataattgagggaccaaaacatgacttttattagttatgggaccaaaatgaaaa 35903544  T
Q  111 ctgaaaattatttaaaggaccaaatgccctcttaagcc 148  Q
    ||  |||||| ||||||||||||||| ||| |||||||    
T  35903543 cttgaaattaattaaaggaccaaatgacctattaagcc 35903506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 35904748 - 35904862
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||| |||||| |||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||    
T  35904748 ggatttttttgactgacggagacagaattaaaggaccaaaacatgagttttattacttatggggccaaaatgaaaattagaaattatttaaaggactaaa 35904847  T
Q  135 tgccctcttaagcct 149  Q
    || ||| ||||||||    
T  35904848 tgacctattaagcct 35904862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 34147215 - 34147132
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 150  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  34147215 ggaccaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttgagggaccaaatgacctattaagccta 34147132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 67 - 150
Target Start/End: Complemental strand, 2276360 - 2276277
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 150  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  2276360 ggaccaaaacatgagttttattacttataggactaaaatgaaaactgaaaattatttgagggaccaaatgacctattaagccta 2276277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 34148363 - 34148481
Alignment:
Q  33 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||||||||| |||||||    | || | |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||    
T  34148363 aaggatttatttgaccgacggaggtgaacttgagggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaattatttgagggacca 34148462  T
Q  133 aatgccctcttaagcctat 151  Q
    |||| ||| ||||||||||    
T  34148463 aatgacctattaagcctat 34148481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 134
Target Start/End: Complemental strand, 37957061 - 37956961
Alignment:
Q  34 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||| |||||| |||||||| ||| |||| |||| ||||||||| ||||||||||||||||||||||||||||| |  |||||| |||| |||||||    
T  37957061 aggatttctttgaccgacggagagacaattaagggaccaaaacatgaattttattacttatgggaccaaaatgaaaatttgaaattaattaagggaccaa 37956962  T
Q  134 a 134  Q
    |    
T  37956961 a 37956961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 33996058 - 33995948
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||||||  | | |||| ||||||||||||||||||||||| |||| |||| |||||||||||| ||||||| |||| ||||||||    
T  33996058 ggatttatttgaccgacggagggaaaattaagggactaaaacatgagttttattagttat-ggacaaaaatgaaaacttaaaattaattaagggaccaaa 33995960  T
Q  135 tgccctcttaag 146  Q
    || ||| |||||    
T  33995959 tgacctattaag 33995948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 2277506 - 2277574
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  2277506 ggaccaaaacataagttttattacttatgggaccaaaatgaaaactggaaattatttgagggaccaaat 2277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 35061348 - 35061434
Alignment:
Q  62 ttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||| |||||||||| |||||||||||| |||||| |||||||||||||||  |||||| |||| |||||||||| ||| ||||||||    
T  35061348 ttaagggactaaaacgtgagttttattagttatgg-accaaaatgaaaacttcaaattaattaagggaccaaatgacctattaagcct 35061434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 11547734 - 11547672
Alignment:
Q  71 taaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||  |||||||||||||||||||    
T  11547734 taaaacatgtgttttattaattatgagaccaaaatgaaaacttgaaattatttaaaggaccaa 11547672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 78 - 150
Target Start/End: Complemental strand, 35061339 - 35061267
Alignment:
Q  78 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 150  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||  |||  ||||| ||| |||||||||    
T  35061339 tgagttttattagttatgggaccaaaatgaaaactgaaaattaattaggggattaaatgacctattaagccta 35061267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 34512888 - 34512825
Alignment:
Q  72 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||| |||  |||||||||    
T  34512888 aaaacatgagttttattaattatgggaccaaaatgaaaactggtaattaattaggggaccaaat 34512825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 62 - 120
Target Start/End: Original strand, 30749325 - 30749383
Alignment:
Q  62 ttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 120  Q
    |||| |||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  30749325 ttaagggaccaaaacatgagttttattaattatgggactaaaatgaaaactggaaatta 30749383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 73 - 150
Target Start/End: Original strand, 34513596 - 34513673
Alignment:
Q  73 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 150  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  ||||| |||  |||||||||| ||| |||||||||    
T  34513596 aaacatgagttttattaattatggaaccaaaatgaaaattggtaattaattaggggaccaaatgacctattaagccta 34513673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 7753507 - 7753640
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||| ||| || |||| |||||||| ||| ||||  || ||| |||| |||| ||||||||||||| |||| |||| |||||||||||||||    
T  7753507 tttggagttaaagttaacacccaaagatttattagaccgacgaggagacaattaagggacaaaaacatgagtttaattaattat-ggaccaaaatgaaaa 7753605  T
Q  111 ctgaaaattatttaaaggaccaaatgccctcttaa 145  Q
     |  |||||| |||  |||||||||| ||| ||||    
T  7753606 tttgaaattaattaggggaccaaatgacctattaa 7753640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 28561433 - 28561382
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||| || || |||||||||||||||| |||||||||||| ||||||    
T  28561433 gttttattaattgtgagaccaaaatgaaaacttaaaattatttaagggacca 28561382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 9474103 - 9474172
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 150  Q
    |||| |||| |||| ||| ||||||||||| ||||||||| |||  |||||||||| ||| |||||||||    
T  9474103 gtttcattatttataggaacaaaatgaaaattgaaaattaattaggggaccaaatgacctattaagccta 9474172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 11315998 - 11315946
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| || |||||||||||||||||||  ||||||||||  |||||||    
T  11315998 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccaa 11315946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 43033147 - 43033103
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaa 125  Q
    ||||||||| || |||||||||||||||||||  |||||||||||    
T  43033147 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaa 43033103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 5e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 35105 - 35211
Alignment:
Q  42 tttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctc 141  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||| || ||||||||||| |||||||||| |||     
T  35105 tttgacagacggagacacagttaaaggaccaaaacatgacttttattagatatgggaccaaaatgaaaattggaaattatttaagggaccaaatgaccta 35204  T
Q  142 ttaagcc 148  Q
    |||||||    
T  35205 ttaagcc 35211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 46201266 - 46201129
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| ||| |  ||||||||||| | |||||| ||||| ||||||||  |||||||||||||||||||||||||||||||||||||||    
T  46201266 tttggggttaaacttaacaggcttggatttatttggccgacggaaacacaattaaaggatcaaaacatgagttttattacttatgggaccaaaatgaaaa 46201167  T
Q  111 ctgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||||||||| |||   ||||||||| ||||||||||||    
T  46201166 ctgaaaatta-ttatgagaccaaatgacctcttaagcct 46201129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 46202288 - 46202401
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||||||||||| ||||| ||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||    
T  46202288 ggatttatttgaccgacggagacacaattaaatgaccagaacatgagttttattacttatgggatcaaaatgaaaactgtaaattatttaagggatcaaa 46202387  T
Q  135 tgccctcttaagcc 148  Q
     | ||| |||||||    
T  46202388 cgacctattaagcc 46202401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 27858 - 27750
Alignment:
Q  42 tttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctc 141  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||  ||||| ||||||||||||| || ||||||||||| |||||||||| |||     
T  27858 tttgacagacggatacacagttaaaggaccaaaacatgacttttattagatatggaaccaaaatgaaaattggaaattatttaagggaccaaatgaccta 27759  T
Q  142 ttaagccta 150  Q
    |||||||||    
T  27758 ttaagccta 27750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 38539780 - 38539663
Alignment:
Q  37 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 136  Q
    |||| |||||| |||||||| ||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||  |||||| |||| ||| ||||||    
T  38539780 atttttttgaccgacggagagacaattaagggaccaaaacatgagttttattatttatgggaccaaaatgaaaacttgaaattaattaagggatcaaatg 38539681  T
Q  137 ccctcttaagcctatatt 154  Q
     ||| |||||||||||||    
T  38539680 acctattaagcctatatt 38539663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 136
Target Start/End: Complemental strand, 25533323 - 25533198
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| ||| ||  |||||||||||| |||||||| ||| || |||||| ||||||||| |||||||| ||||||||||||||||||||    
T  25533323 tttggggttaaacttaacagtcagagatttatttgaccgacggagatacaattgaaggaccaaaacatgaattttattagttatgggaccaaaatgaaaa 25533224  T
Q  111 ctgaaaattatttaaaggaccaaatg 136  Q
    ||  |||||| ||||  |||||||||    
T  25533223 cttgaaattaattaagagaccaaatg 25533198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 35 - 149
Target Start/End: Original strand, 9662241 - 9662355
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||| ||| |||||| || || |||||||||  |||||| ||| |||||||||    
T  9662241 ggatttatttgaccgacggagacaaacgtgagggaccaaaacatgagtttttttagttatggaactaagatgaaaacttgaaattaattagaggaccaaa 9662340  T
Q  135 tgccctcttaagcct 149  Q
    || ||| ||||||||    
T  9662341 tgacctattaagcct 9662355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 32603012 - 32602946
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| |  ||||||||| ||||||||||||||| ||||||  ||||||||| |||||||||    
T  32603012 ggactaaaacgtacgttttattaattatgggaccaaaataaaaacttgaaattatttgaaggaccaa 32602946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 36 - 89
Target Start/End: Complemental strand, 9660783 - 9660730
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttatta 89  Q
    ||||| |||||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  9660783 gatttttttgaccgacggagagacaattaaaggaccaaaacatgagttttatta 9660730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 33779121 - 33779178
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattta 124  Q
    |||||||||| |||||||||||| || |||| ||||||||||||||  ||||||||||    
T  33779121 ggactaaaacgtgagttttattaattgtggggccaaaatgaaaacttgaaattattta 33779178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 133
Target Start/End: Original strand, 10942313 - 10942355
Alignment:
Q  91 ttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||| ||||||||||||||||||||| |||| |||||||    
T  10942313 ttatgggatcaaaatgaaaactgaaaattaattaagggaccaa 10942355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 32256447 - 32256497
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    |||||||| ||||||||||||||||||||||  ||||||||| | ||||||    
T  32256447 ttttattaattatgggaccaaaatgaaaacttgaaattatttgagggacca 32256497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 152
Target Start/End: Complemental strand, 41328287 - 41328213
Alignment:
Q  78 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctata 152  Q
    |||||||||  | |||||||||||||||| ||||  | ||||||||| ||||||||||| ||  |||||||||||    
T  41328287 tgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaattaagcctata 41328213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 36 - 133
Target Start/End: Complemental strand, 30333395 - 30333298
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||||||| ||||||| | |  | | |||| |||| ||  ||||||||| || |||||||||||||||||||  ||||||||||  |||||||    
T  30333395 gatttatttgacaaacggagaaaaaaatgagggaccaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccaa 30333298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 35 - 148
Target Start/End: Original strand, 686 - 799
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| ||| |||||| | || | |||| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||    
T  686 ggatttatttgaccgacagagacaaacttgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattagaggaccaaa 785  T
Q  135 tgccctcttaagcc 148  Q
    || ||| |||||||    
T  786 tgacctattaagcc 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 128594 - 128711
Alignment:
Q  33 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    |||||||| |||||| |||||||||| | |||| |||| |||||||||||||||||| | || ||||||||||||||||| ||||||| |||| ||||||    
T  128594 aaggatttttttgaccgacggagacaaatttaagggaccaaaacatgagttttattagtaataggaccaaaatgaaaacttaaaattaattaagggacca 128693  T
Q  133 aatgccctcttaagccta 150  Q
    |||| ||| |||||||||    
T  128694 aatgacctattaagccta 128711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 35 - 150
Target Start/End: Complemental strand, 127544 - 127429
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| ||||||| || |  | | |||| |||||||||||||||||| |||||||||||||| |||||||  |||||| |||  ||||||||    
T  127544 ggatttatttgaccgacggaggcaaacatgagggaccaaaacatgagttttattagttatgggaccaaaacgaaaacttgaaattaattaggggaccaaa 127445  T
Q  135 tgccctcttaagccta 150  Q
    || ||| |||||||||    
T  127444 tgacctattaagccta 127429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 150
Target Start/End: Original strand, 1122 - 1205
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 150  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||| |||||||||    
T  1122 ggaccaaaacatgagttttattacttatgggaccaaaatgaaaactggaaattatttgagggaccaaatgacctattaagccta 1205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 136
Target Start/End: Complemental strand, 16208633 - 16208534
Alignment:
Q  37 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 136  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||| ||||||||  |||||||||||||| |||| |||||||||||||| ||||||||||    
T  16208633 atttttttgacagactaagacacagttaaaggaccaaaacatgacttttattagatatgggaccaaaataaaaattgaaaattatttaagggaccaaatg 16208534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 11 - 131
Target Start/End: Complemental strand, 7310410 - 7310291
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| ||||| || |||||||||  | ||||||| | |  | ||||||| ||||||  ||||||||| ||||||||||||||||||||    
T  7310410 tttggagttaaacttaacagccgag-atttatttggtaaacggagaaaaacctgaaggacttaaacatacgttttattaattatgggaccaaaatgaaaa 7310312  T
Q  111 ctgaaaattatttaaaggacc 131  Q
    || ||||||||||||||||||    
T  7310311 cttaaaattatttaaaggacc 7310291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 7308491 - 7308570
Alignment:
Q  74 aacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatat 153  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||| |||| || ||||||| ||| ||||||||||||    
T  7308491 aacatgagttttattacttataggaccaaaatgaaaacttgaaattaattaaggggccaaatgacctattaagcctatat 7308570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 233601 - 233667
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| ||  |||||||| |||||||||||||||||||| |  |||||||||||||||||||    
T  233601 ggactaaaacgtgttttttattaattatgggaccaaaatgaaaaattgaaattatttaaaggaccaa 233667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 232241 - 232189
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  232241 gttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 232189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 6452562 - 6452614
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||  |||||||    
T  6452562 gttttattaattatgggaccaaaatgaaaacttgaaattatttaggggaccaa 6452614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 12780610 - 12780538
Alignment:
Q  63 taaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||| ||||||||||||| |||||||| |||||||| ||| || |||||| ||||||| |||| ||| |||||    
T  12780610 taaatgactaaaacatgaattttattaattatgggatcaacataaaaactaaaaattaattaagggatcaaat 12780538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 135
Target Start/End: Complemental strand, 12784789 - 12784717
Alignment:
Q  63 taaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||||||||||||||||| |||||||| ||||| |||||| || ||| || ||||||| |||| ||| |||||    
T  12784789 taaaggactaaaacatgaattttattaattatgagaccaacataaaatctaaaaattaattaagggatcaaat 12784717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 35037197 - 35037145
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    |||||| | ||||| |||||||||||||||||||||||| ||| |||||||||    
T  35037197 ttttatgagttatgagaccaaaatgaaaactgaaaattaattagaggaccaaa 35037145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 132
Target Start/End: Original strand, 7311777 - 7311826
Alignment:
Q  83 tttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||| || ||||| ||||||||||||| |||||||||||| ||||||    
T  7311777 tttattaattgtgggatcaaaatgaaaacttaaaattatttaagggacca 7311826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 150
Target Start/End: Original strand, 1010369 - 1010484
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||||||| ||||||||||||||| ||||||  |||||| |||| ||||||||    
T  1010369 ggatttatttgactgacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaataaaaacttgaaattaattaagggaccaaa 1010468  T
Q  135 tgccctcttaagccta 150  Q
    || ||| |||||||||    
T  1010469 tgacctattaagccta 1010484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 146
Target Start/End: Complemental strand, 8521366 - 8521255
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||||||| ||||||||||||||||||||||  |||||| |||| ||||||||    
T  8521366 ggatttatttgactgacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaagggaccaaa 8521267  T
Q  135 tgccctcttaag 146  Q
    || ||| |||||    
T  8521266 tgacctattaag 8521255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 149
Target Start/End: Original strand, 8523750 - 8523865
Alignment:
Q  34 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||||||| |||||||||| |  | |||||  |||||||||||||||||| ||||||||||||||||||||||  |||||| |||  |||||||    
T  8523750 aggatttatttgactgacggagacaaacatgaaggatcaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaggggaccaa 8523849  T
Q  134 atgccctcttaagcct 149  Q
    ||| ||| ||||||||    
T  8523850 atgacctattaagcct 8523865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 32759051 - 32759167
Alignment:
Q  33 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||||||||| |||||||    | || | |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||    
T  32759051 aaggatttatttgaccgacggaggtgaacttgagggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaattatttgagggacca 32759150  T
Q  133 aatgccctcttaagcct 149  Q
    |||| ||| ||||||||    
T  32759151 aatgacctattaagcct 32759167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 9169698 - 9169584
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacat-gagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||||||| |||||||| ||| ||||| ||| ||||||| ||||||||||| ||||||||| ||||||||||||  |||||| |||| || ||||    
T  9169698 ggatttatttgaccgacggagagacaattaaaagaccaaaacatagagttttattaattatgggactaaaatgaaaacttgaaattaattaaggggccaa 9169599  T
Q  134 atgccctcttaagcc 148  Q
    ||| ||| |||||||    
T  9169598 atgacctattaagcc 9169584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 32757904 - 32757826
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaa 145  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||| ||| ||||    
T  32757904 ggaccaaaacatgagttttattatttatgggaccaaaatgaaaactggaaattatttgagggaccaaatgacctattaa 32757826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 42 - 153
Target Start/End: Complemental strand, 26047917 - 26047806
Alignment:
Q  42 tttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctc 141  Q
    ||||||||||||||  ||| || | ||||||||||||||||||||||| ||||| ||||||||| |||| |  |||||| ||| ||||||||||| |||     
T  26047917 tttgacagacggagggacaattgagggactaaaacatgagttttattagttatgagaccaaaataaaaatttgaaattaattagaggaccaaatgaccta 26047818  T
Q  142 ttaagcctatat 153  Q
    |||| |||||||    
T  26047817 ttaaacctatat 26047806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 1009294 - 1009182
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||||||||||| || ||||||| |  | ||| || |||||||||||||||||| |||||| |||||||||||||||  |||||| |||  | |||||||    
T  1009294 gatttatttgactgatggagacaaacatgaagaaccaaaacatgagttttattagttatggaaccaaaatgaaaacttgaaattaattagggaaccaaat 1009195  T
Q  136 gccctcttaagcc 148  Q
    | ||| |||||||    
T  1009194 gacctattaagcc 1009182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 82 - 133
Target Start/End: Original strand, 34899003 - 34899054
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  34899003 ttttattacttatgggaccaaaatgaaaaatgaaaattaattaagggaccaa 34899054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 80 - 151
Target Start/End: Original strand, 23334017 - 23334088
Alignment:
Q  80 agttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctat 151  Q
    |||||||  |||||||||||||||||| ||||| | ||||||||| ||||||||||| ||  ||||||||||    
T  23334017 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctat 23334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 65 - 132
Target Start/End: Complemental strand, 30857881 - 30857814
Alignment:
Q  65 aaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    |||||| |||||||  ||||||||| || ||||||||||||||||||| ||||||| ||| |||||||    
T  30857881 aaggaccaaaacatacgttttattaattgtgggaccaaaatgaaaacttaaaattaattagaggacca 30857814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 23325980 - 23325922
Alignment:
Q  78 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 136  Q
    |||||||||  |||||||||||||||||| ||||| | ||||||||| |||||||||||    
T  23325980 tgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatg 23325922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 10978330 - 10978403
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatatt 154  Q
    ||||||||| |||| ||||||||||||||| || |||||| |||  ||||||||||  || |||||||||||||    
T  10978330 gttttattatttataggaccaaaatgaaaattggaaattaattaggggaccaaatgatctattaagcctatatt 10978403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 11846308 - 11846376
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 135  Q
    |||||||||||  | |||||||| ||||| ||||||||||||| ||| |||||| |||| |||||||||    
T  11846308 ggactaaaacaaaatttttattagttatgagaccaaaatgaaacctgtaaattaattaagggaccaaat 11846376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 24503249 - 24503197
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| |||||||    
T  24503249 gttttattacttatgggaccaaaatgaaaattggtaattaattaagggaccaa 24503197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 124
Target Start/End: Original strand, 22049187 - 22049230
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattattta 124  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||    
T  22049187 gttttattaattatgggaccaaaatgaaaacttgaaattattta 22049230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 22308780 - 22308903
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| || ||| ||||||||||| || ||||||  | |  | | ||||||||||    ||||||||| ||||||||||||||||||||    
T  22308780 tttggggttaaacttaacaaccatggatttatttggcaaacggagcaaaatgtgagggactaaaacgcctgttttattaattatgggaccaaaatgaaaa 22308879  T
Q  111 ctgaaaattatttaaaggaccaaa 134  Q
    |   ||||||||||  ||||||||    
T  22308880 catgaaattatttaggggaccaaa 22308903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 24509087 - 24509138
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| ||||||    
T  24509087 gttttattacttatgggaccaaaatgaaaattggtaattaattaagggacca 24509138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 133
Target Start/End: Complemental strand, 34894213 - 34894162
Alignment:
Q  82 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||||| |||||||||||||||| || |||||| |||| |||||||    
T  34894213 ttttattacttacgggaccaaaatgaaaaatggaaattaattaagggaccaa 34894162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 149
Target Start/End: Complemental strand, 11796648 - 11796566
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 149  Q
    |||| |||| ||||||||||  | |||||||||||||||| ||||| | |||||||||  |||||||||| ||  ||||||||    
T  11796648 ggaccaaaatatgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcct 11796566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 34 - 150
Target Start/End: Original strand, 3455629 - 3455745
Alignment:
Q  34 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||||||| |||||||||| |  | |||||| |||||||||||||||||| ||||| ||||||||||||||||  |||||| ||   |||||||    
T  3455629 aggatttatttgactgacggagacaaacatgaaggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttgaaattaattcggggaccaa 3455728  T
Q  134 atgccctcttaagccta 150  Q
    ||| ||| |||||||||    
T  3455729 atgacctattaagccta 3455745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 145
Target Start/End: Original strand, 20288205 - 20288339
Alignment:
Q  11 tttggtgttaaacttaccagccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 110  Q
    ||||| |||||||||| ||| || |||||||||||||  || |||||| | || | |||| || ||||||||||||||| |||||||| |||||||||||    
T  20288205 tttggagttaaacttaacagtcagggatttatttgactaacagagacaaacttgagggaccaacacatgagttttattaattatgggatcaaaatgaaaa 20288304  T
Q  111 ctgaaaattatttaaaggaccaaatgccctcttaa 145  Q
    || ||||||| |||  |||||||||| ||| ||||    
T  20288305 ctaaaaattaattaggggaccaaatggcctattaa 20288339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 36 - 130
Target Start/End: Original strand, 28909611 - 28909705
Alignment:
Q  36 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggac 130  Q
    ||||||||||||  ||||||||| |  | | |||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  28909611 gatttatttgaccaacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactgaaaattaattagaggac 28909705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 37735385 - 37735319
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  37735385 ggactaaaacatacgttttattaattatgggaccaaaatgaaaacttaaaattatttaaaggaccaa 37735319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 35 - 136
Target Start/End: Original strand, 43174711 - 43174812
Alignment:
Q  35 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 134  Q
    ||||||||||||  |||||||| | | || | |||| |||||||||||||||||| |||||||  ||||||||||||| |||||||  ||| ||||||||    
T  43174711 ggatttatttgattgacggagatagatttgagggaccaaaacatgagttttattagttatggggtcaaaatgaaaacttaaaattaaataagggaccaaa 43174810  T
Q  135 tg 136  Q
    ||    
T  43174811 tg 43174812  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 18442331 - 18442265
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| || |||||||||||||||||||  |||||||||| ||||||||    
T  18442331 ggactaaaacgtgggttttattaattgtgggaccaaaatgaaaacttgaaattatttagaggaccaa 18442265  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 19487405 - 19487339
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| || |||||||||||||||||||  |||||||||| ||||||||    
T  19487405 ggactaaaacgtgggttttattaattgtgggaccaaaatgaaaacttgaaattatttagaggaccaa 19487339  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 50809500 - 50809434
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50809500 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50809434  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 50810871 - 50810937
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50810871 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50810937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Complemental strand, 50864993 - 50864927
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50864993 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 50866362 - 50866428
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50866362 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50866428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 42684955 - 42684898
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattta 124  Q
    |||||||||| | |||||||||  |||||| ||||||||||||||| |||||||||||    
T  42684955 ggactaaaacgtcagttttattcattatggaaccaaaatgaaaacttaaaattattta 42684898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 3208549 - 3208497
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| |||||||||||||||||||| || |||||| ||| ||||||||    
T  3208549 gttttattaattatgggaccaaaatgaaaaatggaaattaattagaggaccaa 3208497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 151
Target Start/End: Original strand, 20336693 - 20336749
Alignment:
Q  95 gggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctat 151  Q
    |||||||||||||||||||||||||| |||  |||||||||| |||  |||||||||    
T  20336693 gggaccaaaatgaaaactgaaaattaattaggggaccaaatgacctagtaagcctat 20336749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 3209982 - 3210033
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||| || ||||||||||||||||| | |||||||||||| ||||||    
T  3209982 gttttattaattgtgggaccaaaatgaaaatttaaaattatttaagggacca 3210033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 43173960 - 43173882
Alignment:
Q  72 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 150  Q
    ||||||||| |||||||| |||||||  ||||||||||| || |||||| |||  ||| |||||| ||| |||||||||    
T  43173960 aaaacatgaattttattagttatggggacaaaatgaaaattggaaattaattaggggatcaaatgacctattaagccta 43173882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 12108034 - 12108083
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggac 130  Q
    ||||||||| || |||||||||||||||||||  ||||||||||| ||||    
T  12108034 gttttattagttgtgggaccaaaatgaaaacttgaaattatttaagggac 12108083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 53194921 - 53194962
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatt 122  Q
    ||||||||| ||||||||||||||||||||||  ||||||||    
T  53194921 gttttattaattatgggaccaaaatgaaaacttgaaattatt 53194962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 55328342 - 55328387
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaact 112  Q
    |||||||||||||| |||||||| ||||| || |||||||||||||    
T  55328342 ggactaaaacatgaattttattaattatgagatcaaaatgaaaact 55328387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 5123383 - 5123423
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatga 107  Q
    |||||||||| |||||||||||| |||| ||||||||||||    
T  5123383 ggactaaaacgtgagttttattagttatcggaccaaaatga 5123423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 38247527 - 38247579
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||||||||  |||||||||||||| || |||||| |||| |||||||    
T  38247527 gttttattacttatatgaccaaaatgaaaattggaaattaattaagggaccaa 38247579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 40244252 - 40244200
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||||||| || || ||||||||||||||||  ||||||||||| |||||||    
T  40244252 gttttattaattgtgagaccaaaatgaaaacttgaaattatttaagggaccaa 40244200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 41544723 - 41544675
Alignment:
Q  85 tattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||| |||| |||||||||||||||||  ||||||||||| |||||||    
T  41544723 tattaattataggaccaaaatgaaaacttgaaattatttaatggaccaa 41544675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 129
Target Start/End: Complemental strand, 18891 - 18829
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaagga 129  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  18891 ggactaaaacataagttttattaaatatgggaccaaaatgaaaacttaaaattatttaaagga 18829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 133
Target Start/End: Original strand, 43612 - 43678
Alignment:
Q  67 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 133  Q
    ||||| ||||||  ||||||||| ||||||||||||||| |||||| |||||||||| | |||||||    
T  43612 ggacttaaacatacgttttattaattatgggaccaaaataaaaacttaaaattatttgagggaccaa 43678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 132
Target Start/End: Complemental strand, 124034 - 123983
Alignment:
Q  81 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 132  Q
    ||||||||| || |||||||||||||||||||  ||||||||| ||||||||    
T  124034 gttttattaattgtgggaccaaaatgaaaacttgaaattatttgaaggacca 123983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 38608 - 38532
Alignment:
Q  78 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatatt 154  Q
    |||||||||  | |||||||||||||||| ||||| | |||||||||  |||||||||| ||  ||||||| |||||    
T  38608 tgagttttacaatttatgggaccaaaatggaaactcataattatttaggggaccaaatgtccaattaagccaatatt 38532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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