View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_19 (Length: 431)
Name: NF8906_low_19
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_19 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Complemental strand, 41516027 - 41515610
Alignment:
| Q |
12 |
ggacatcagacatcaacaaatatataaaaatatcttatacaagcacaagttactcaaaatgtaacagaaacacattgcatgtatgggccgtccctcgatg |
111 |
Q |
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| T |
41516027 |
ggacatccgacatcaacaaatatataaaaatatcttatacaagcacaagttactcaa--tgtaacagaaacacattgcatgtatgggccgtccttggatg |
41515930 |
T |
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| Q |
112 |
actacctgaggctgacgataaatgtactcctcactaatacgcattgcagtgcaacctagaccccatctgataatatccattgatggaactactcgccatc |
211 |
Q |
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| T |
41515929 |
aatacctgaggctgacgataaatgtactcctcactaatacgcattgcagtgcaacctagaccccatctgataatatccattgatggaactactcgccatc |
41515830 |
T |
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| Q |
212 |
ttggcccacaaaggaatgggtgccttagagcatccaaacaactgtagaacatttcacatggttaacaccagtaatttttcaatctttggtaaatcaaact |
311 |
Q |
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| T |
41515829 |
ttggcccacaaaggaatgggtgccttagagcatccaaacaactgtagaacatttcacatggttaacaccagtaatttttcaatctttggtaaatcaaact |
41515730 |
T |
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| Q |
312 |
aatatatctaatcaaatgctattcatggttcacaattgtcagaaactagctacgtgttgtcaaaagatcaagcctcctgaaagaccaaagaaacttgaac |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41515729 |
aatatatctaatcaaatgctattcatggttcacaattgtcagaaactagctacgtgttgtcaaaagatcaagcctcctgaaagaccaaagaaacttgaac |
41515630 |
T |
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| Q |
412 |
acttctctttatgatttttt |
431 |
Q |
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| T |
41515629 |
acttctctttatgatttttt |
41515610 |
T |
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