View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_21 (Length: 406)
Name: NF8906_low_21
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 14 - 406
Target Start/End: Complemental strand, 34956415 - 34956023
Alignment:
| Q |
14 |
ggacatcatgagcatgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcatt |
113 |
Q |
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| T |
34956415 |
ggacatcatgagcatgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaatttaaattagcatgatttgtatcatt |
34956316 |
T |
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| Q |
114 |
ttactttgaagtgtttatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatgg |
213 |
Q |
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| T |
34956315 |
ttactttgaagtgtttatgcttttaagtataattgaacatcactgtttaccattagagtacaacatgcctgatatgaagtgtctctgctgcagacaatgg |
34956216 |
T |
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| Q |
214 |
agaatatattggcgtctttcccttcagagtatcataagctagctttggaggataaattaaatgttacagaggattcaaaaagaccagcaccgtcatccgg |
313 |
Q |
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| T |
34956215 |
agaatatattggcgtctttcccttcagagtattataagctagctttggaggataaattaaatgttacagaggattcaaaaagaccagcaccgtcatccgg |
34956116 |
T |
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| Q |
314 |
gggatgtagaattgaaggatatgtacgtgtcaagaaggtaaactcgcatacggataaaatttaccttctaattctagtgtaatgtggaaaact |
406 |
Q |
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| T |
34956115 |
gggatgtagaattgaaggatatgtacgtgtcaagaaggtaaactcgcatacggataaaatttaccttctaattctagtgtaatgtggaaaact |
34956023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 289 - 359
Target Start/End: Original strand, 31391257 - 31391327
Alignment:
| Q |
289 |
caaaaagaccagcaccgtcatccgggggatgtagaattgaaggatatgtacgtgtcaagaaggtaaactcg |
359 |
Q |
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| T |
31391257 |
caaaaagaccagcaccgtcaaccggtggatgtagagttgagggatatgtgcgtgtgaaaaaggtaaactcg |
31391327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 90
Target Start/End: Original strand, 31391018 - 31391094
Alignment:
| Q |
12 |
atggacatcatgagcatgagtcttattatggagatcgtgatacagatagccttgttaaggtacacattatatttaattt |
90 |
Q |
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| T |
31391018 |
atggacatcatgaacatgagtcctattatggagaccgtgatacagaaagcctagtcaaggttcaca--atatttaattt |
31391094 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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