View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_22 (Length: 391)
Name: NF8906_low_22
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 135 - 374
Target Start/End: Complemental strand, 37938596 - 37938357
Alignment:
| Q |
135 |
tattattttcttggatgactgaaaatttggtttgcagatcatagtagtctttcattgtttgttccaccactttcctcaaagctttgttttcttctttcat |
234 |
Q |
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| T |
37938596 |
tattattttcttggatgactgaaaatttggtttgcagatcatagtagtctttcattgtttgttccaccactttcctcaaggctttgttttcttctttcat |
37938497 |
T |
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| Q |
235 |
actttccatctccatttctaaagcacttaactgtagagtatacatatatatcatttttcacagacaattaaaactatctagatacctatttttcaagagt |
334 |
Q |
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| T |
37938496 |
actttccatctccatttctaaagcacttaactgtatagtatacatatatatcatttttcacagacaattaaaactatctagatgcctatttttcaagagt |
37938397 |
T |
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| Q |
335 |
tatacattacatgcatatatacatacactatagaaaatat |
374 |
Q |
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| T |
37938396 |
tatacattacatgcatatatacatacactatagaaaatat |
37938357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 35 - 147
Target Start/End: Original strand, 37938228 - 37938340
Alignment:
| Q |
35 |
ctctaatagtatctatatttggatagagtacccccttaattacactcttcatccataattaatattattttctttgtttgttcaaagaaaacattgtttg |
134 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37938228 |
ctctaatagtatctatattttgatagagtacccccttaattacactcttcatccataattaatatttatttctttgtttgttcaaagaaaacattgtttg |
37938327 |
T |
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| Q |
135 |
tattattttcttg |
147 |
Q |
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| T |
37938328 |
tattattttcttg |
37938340 |
T |
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