View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8906_low_23 (Length: 380)
Name: NF8906_low_23
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 14002310 - 14002218
Alignment:
| Q |
113 |
tctataggatcaaatgataaacttgacatcaaaatacaaatacaaattagatatcaaacaaagttcgcaatatatttatatggtattgatacac |
206 |
Q |
| |
|
|||||| || |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
14002310 |
tctatatgagcaaatgataa-cttgacatcaaaatacaaatacaaattagacatcaaacaaagttcgcaatatatttatacggtattgatacac |
14002218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 271 - 374
Target Start/End: Complemental strand, 14002154 - 14002051
Alignment:
| Q |
271 |
aaaccatctagccactgtcgtctgcaactcacggtctctcgtttgatctaaccaccaccagccaacttctccctccttgctgcctcctgttgatgtccat |
370 |
Q |
| |
|
|||||||| |||||| |||||| |||||||||| ||||| ||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
14002154 |
aaaccatccagccaccgtcgtccgcaactcacgatctcttctttgatctaaccaccgccagcctacttctccctccttgctgcctcctgttgctgtccaa |
14002055 |
T |
|
| Q |
371 |
ctca |
374 |
Q |
| |
|
|||| |
|
|
| T |
14002054 |
ctca |
14002051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 14002280 - 14002211
Alignment:
| Q |
22 |
aaatataaatacaaattagacatcaaacaaagttcgcaatatagttatacggtattgatacaccagtttt |
91 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14002280 |
aaatacaaatacaaattagacatcaaacaaagttcgcaatatatttatacggtattgatacaccagtttt |
14002211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 23885844 - 23885884
Alignment:
| Q |
132 |
aacttgacatcaaaatacaaatacaaattagatatcaaaca |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
23885844 |
aacttgacatcaaaatacaaacacaaattagacatcaaaca |
23885884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 56398541 - 56398501
Alignment:
| Q |
132 |
aacttgacatcaaaatacaaatacaaattagatatcaaaca |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
56398541 |
aacttgacatcaaaatacaaacacaaattagacatcaaaca |
56398501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 6284572 - 6284612
Alignment:
| Q |
132 |
aacttgacatcaaaatacaaatacaaattagatatcaaaca |
172 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
6284572 |
aacttgacatcaaaatacaaacacaaattagacatcaaaca |
6284612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University