View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_31 (Length: 342)
Name: NF8906_low_31
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 22837466 - 22837144
Alignment:
| Q |
15 |
gagacaactgcgagtactaatacatcgccgaggataatggcgattaacaccaaagtccccattcttggaccaccatttctattagtcttgtttctcgaca |
114 |
Q |
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| T |
22837466 |
gagacaactgcgagtactaatacatcgccgaggataatggcgattaaaaccaaagtccccattcttggaccaccatttctatgagtcttgtttctcgaca |
22837367 |
T |
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| Q |
115 |
ttatactcgaagaagatggaaccaacgacgaagcaagggcaggaacgtctttacatttttgcaatggagcaccacataaagacgggttttgagcaaaaga |
214 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22837366 |
ttatacttgaagaagatggaaccaacgatgaagcaagggcaggaacgtctttacatttttgcaatggagcaccacataaagacgggttttgagcaaaaga |
22837267 |
T |
|
| Q |
215 |
tgaatcaggaaaacccgaaagtaattcaggtactctaccagagaggttgttaccagagacattaaagtcttggaggtaagacaggtttatatttggaatg |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
22837266 |
tgaatcaggaaaacccgaaagtaattcaggtactctaccagagaggttgttaccagagacattgaagtcttggaggtaagacaggtttatatttggaatg |
22837167 |
T |
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| Q |
315 |
tgtccatggatttgatgtccatc |
337 |
Q |
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|||||||||||||||| |||||| |
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| T |
22837166 |
tgtccatggatttgatttccatc |
22837144 |
T |
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