View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8906_low_36 (Length: 324)

Name: NF8906_low_36
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8906_low_36
NF8906_low_36
[»] chr7 (2 HSPs)
chr7 (162-312)||(45665277-45665431)
chr7 (27-102)||(45665142-45665217)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 45665277 - 45665431
Alignment:
Q  162 gactgatcacggccttgtctcgtgtgtattcagtacgtaaataagaaagatcactttcagatttggttg-nnnnnnnngttggttacgaaac---nnnnn 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||            
T  45665277 gactgatcacggccttgtctcgtgtgtattcagtacgtaaataagaaagatcactttcagatttggttgtttttttttgttggttacgaaacaaaaaaaa 45665376  T
Q  258 nnntgcacagaaaccaaacactcttcaataataacatcatatagctgctcatctc 312  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45665377 aaatgcacagaaaccaaacactcttcaataataacatcatatagctgctcatctc 45665431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 45665142 - 45665217
Alignment:
Q  27 ataaattaaaaataaaagcaaacacgaaatgaggtataaaaaaggaagatcaatttatggacaatttagaacgatg 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45665142 ataaattaaaaataaaagcaaacacgaaatgaggtgtaaaaaaggaagatcaatttatggacaatttagaacgatg 45665217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University