View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8906_low_38 (Length: 317)

Name: NF8906_low_38
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8906_low_38
NF8906_low_38
[»] chr2 (1 HSPs)
chr2 (7-271)||(10296655-10296919)
[»] chr7 (7 HSPs)
chr7 (209-305)||(43794760-43794856)
chr7 (8-71)||(28517417-28517480)
chr7 (7-72)||(21326967-21327032)
chr7 (7-74)||(48539092-48539159)
chr7 (26-111)||(982823-982908)
chr7 (7-72)||(5825186-5825251)
chr7 (27-71)||(40726629-40726673)
[»] chr4 (2 HSPs)
chr4 (8-78)||(50442609-50442679)
chr4 (8-67)||(23255631-23255690)
[»] chr3 (3 HSPs)
chr3 (8-72)||(26772671-26772735)
chr3 (26-73)||(26276527-26276574)
chr3 (21-73)||(32691009-32691061)
[»] chr6 (3 HSPs)
chr6 (7-72)||(17249434-17249499)
chr6 (7-72)||(3137376-3137441)
chr6 (7-71)||(357845-357909)
[»] chr5 (5 HSPs)
chr5 (9-72)||(430515-430578)
chr5 (21-71)||(15292168-15292218)
chr5 (7-72)||(27336608-27336673)
chr5 (8-72)||(25663162-25663226)
chr5 (7-71)||(32269926-32269990)
[»] chr1 (2 HSPs)
chr1 (29-72)||(2898615-2898658)
chr1 (8-71)||(34644480-34644543)
[»] chr8 (4 HSPs)
chr8 (21-71)||(8882258-8882308)
chr8 (7-72)||(3187883-3187948)
chr8 (7-72)||(4699784-4699849)
chr8 (27-72)||(39434580-39434625)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 271
Target Start/End: Original strand, 10296655 - 10296919
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaagagttagcgagacagtttgttgcatgtttgccttc 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||    
T  10296655 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattagttttgccatccaaaaagagttagcggcacagtttgttgcatgtttgccctc 10296754  T
Q  107 cattcctctataatgaccttaatctttataagaaaagccatttctgaactagtttaatttgtatcttctacgctaggatgcacaaaaattgtcatttttc 206  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10296755 cattcctctataatgaccttaatgtttataagaaaattcatttctgaactagtttaatttgtatcttctacgctaggatgcacaaaaattgtcatttttc 10296854  T
Q  207 tccggtgacccatcacagaggttagtagctgattgtactctcatggatgataatacagtttttgt 271  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10296855 tccggtgacccatcacagaggttagtagctgattgtactctcatggatgataatacagcttttgt 10296919  T

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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 209 - 305
Target Start/End: Complemental strand, 43794856 - 43794760
Alignment:
Q  209 cggtgacccatcacagaggttagtagctgattgtactctcatggatgataatacagtttttgtatcagattgtaaaggaaacattgctgtttgatgt 305  Q
    ||||||||||||||||||||| || |||||||| | ||||||||||||||| || | | |||| |||||| ||||||||| ||| ||||||| ||||    
T  43794856 cggtgacccatcacagaggttggttgctgattgcattctcatggatgataacacggctattgtttcagatcgtaaaggaagcatagctgttttatgt 43794760  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 28517417 - 28517480
Alignment:
Q  8 caatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaa 71  Q
    |||||||||||  |||||||||||| |||||| ||||| |||||||  ||||||||||||||||    
T  28517417 caatgttatgtctcctaagtccatgaatgttgtgtttacgaggattggttttgccatccaaaaa 28517480  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 21326967 - 21327032
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||||||||  |||| ||||||| |||||| ||| | ||||||| ||||||||||||||||||    
T  21326967 gcaatgttatgtctcctaggtccatgaatgttgtgttcacgaggattgattttgccatccaaaaag 21327032  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 7 - 74
Target Start/End: Complemental strand, 48539159 - 48539092
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaagag 74  Q
    ||||||| ||||  |||| ||||||| |||||| ||||| |||||||  |||||||||||||||||||    
T  48539159 gcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaagag 48539092  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 111
Target Start/End: Complemental strand, 982908 - 982823
Alignment:
Q  26 gtccatggatgttgcgtttaagaggattaattttgccatccaaaaagagttagcgagacagtttgttgcatgtttgccttccattc 111  Q
    ||||||| |||||| ||| | |||||||  | |||||||||||||||   |||||| |||| ||||||| ||||||||||| ||||    
T  982908 gtccatgaatgttgtgttcacgaggattggtattgccatccaaaaaggtctagcgacacagcttgttgcctgtttgccttctattc 982823  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 5825251 - 5825186
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||||||||  |||| ||| |||||||||| ||||| |||||||  |||||||||| ||||||    
T  5825251 gcaatgttatgtctcctaggtctatggatgttgtgtttacgaggattggttttgccatcgaaaaag 5825186  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 40726629 - 40726673
Alignment:
Q  27 tccatggatgttgcgtttaagaggattaattttgccatccaaaaa 71  Q
    |||||| |||||| ||||| ||||||| |||||||||||||||||    
T  40726629 tccatgaatgttgtgtttatgaggattgattttgccatccaaaaa 40726673  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Original strand, 50442609 - 50442679
Alignment:
Q  8 caatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaagagttag 78  Q
    |||||||||||  |||| || ||||||||||| |||||||||||||  ||||||||||||||||| |||||    
T  50442609 caatgttatgtctcctaggttcatggatgttgtgtttaagaggattggttttgccatccaaaaagggttag 50442679  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 23255690 - 23255631
Alignment:
Q  8 caatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatcca 67  Q
    |||||||||||  |||||||||||| || ||| ||||| ||||||| |||||||||||||    
T  23255690 caatgttatgtctcctaagtccatgaatattgtgtttacgaggattgattttgccatcca 23255631  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 26772735 - 26772671
Alignment:
Q  8 caatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    |||||||||||  |||| ||||||| |||||| ||||| ||||||| ||||||||||||||||||    
T  26772735 caatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattttgccatccaaaaag 26772671  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 26276574 - 26276527
Alignment:
Q  26 gtccatggatgttgcgtttaagaggattaattttgccatccaaaaaga 73  Q
    ||||||| |||||| ||||| ||||||| |||||||||||||||||||    
T  26276574 gtccatgaatgttgtgtttatgaggattgattttgccatccaaaaaga 26276527  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 32691009 - 32691061
Alignment:
Q  21 cctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaaga 73  Q
    |||||||| ||| |||||| ||||||||||||| |||||  ||||||||||||    
T  32691009 cctaagtctatgaatgttgtgtttaagaggattgattttatcatccaaaaaga 32691061  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 17249434 - 17249499
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||||||||  ||||||| |||| |||||| ||||| |||||||  |||||||||||||||||    
T  17249434 gcaatgttatgtctcctaagttcatgaatgttgtgtttacgaggattggttttgccatccaaaaag 17249499  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Original strand, 3137376 - 3137441
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||| ||||  |||| ||||||| |||||| ||||| |||||||  |||||||||||||||||    
T  3137376 gcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattggttttgccatccaaaaag 3137441  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 357845 - 357909
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaa 71  Q
    |||||||||| |  |||| ||||||| |||||| ||||| || |||||||||||||||| |||||    
T  357845 gcaatgttatctctcctaggtccatgaatgttgtgtttacgaagattaattttgccatctaaaaa 357909  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 430578 - 430515
Alignment:
Q  9 aatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||||||  |||| ||||||| |||||| ||||| ||||||| ||| ||||||||||||||    
T  430578 aatgttatgtctcctaggtccatgaatgttgtgtttacgaggattgattatgccatccaaaaag 430515  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Original strand, 15292168 - 15292218
Alignment:
Q  21 cctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaa 71  Q
    |||| ||||||| |||||| ||||| ||||||| |||||||||||||||||    
T  15292168 cctaggtccatgaatgttgtgtttatgaggattgattttgccatccaaaaa 15292218  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 27336673 - 27336608
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||||||||  |||||||||||| ||||||  ||||  |||||| ||||||||||| ||||||    
T  27336673 gcaatgttatgtctcctaagtccatgaatgttgtttttacaaggattgattttgccatcaaaaaag 27336608  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 72
Target Start/End: Original strand, 25663162 - 25663226
Alignment:
Q  8 caatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||||||| ||||| ||||||| |||||| ||||| |||||||   |||| |||||||||||    
T  25663162 caatgttatgtcccctaggtccatgaatgttgagtttacgaggattggctttgtcatccaaaaag 25663226  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 32269926 - 32269990
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaa 71  Q
    ||||||| ||||  |||| ||||||| |||||| ||||| ||||||| |||| ||||||||||||    
T  32269926 gcaatgtcatgtctcctaggtccatgaatgttgtgtttacgaggattgatttcgccatccaaaaa 32269990  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 2898658 - 2898615
Alignment:
Q  29 catggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    |||| |||||| ||||||||||||| ||||||||||||||||||    
T  2898658 catgaatgttgtgtttaagaggattgattttgccatccaaaaag 2898615  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 34644543 - 34644480
Alignment:
Q  8 caatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaa 71  Q
    |||||||||||  |||| ||||||| |||||| ||||| || |||| |||||||||||||||||    
T  34644543 caatgttatgtctcctaggtccatgaatgttgtgtttacgatgattgattttgccatccaaaaa 34644480  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 8882308 - 8882258
Alignment:
Q  21 cctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaa 71  Q
    |||| ||||||| |||||| ||||| ||||||||||||||||||| |||||    
T  8882308 cctaggtccatgaatgttgtgtttacgaggattaattttgccatcaaaaaa 8882258  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 3187948 - 3187883
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||||||||||  |||| ||||||| |||||| ||||| ||| |||  |||||||||||||||||    
T  3187948 gcaatgttatgtctcctaggtccatgaatgttgtgtttacgagaattggttttgccatccaaaaag 3187883  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 72
Target Start/End: Complemental strand, 4699849 - 4699784
Alignment:
Q  7 gcaatgttatgtaccctaagtccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    ||||| ||||||  |||| ||||||| |||||| |||||  ||||||| |||||||||||||||||    
T  4699849 gcaatattatgtcacctaggtccatgaatgttgtgtttacaaggattagttttgccatccaaaaag 4699784  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 39434625 - 39434580
Alignment:
Q  27 tccatggatgttgcgtttaagaggattaattttgccatccaaaaag 72  Q
    |||||| |||||| ||||| ||||||| ||||||||||||||||||    
T  39434625 tccatgaatgttgtgtttacgaggattgattttgccatccaaaaag 39434580  T

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