View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_40 (Length: 315)
Name: NF8906_low_40
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_40 |
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| [»] chr2 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 38412624 - 38412312
Alignment:
| Q |
7 |
tggacatcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacggaaagtacgtaacatt |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
38412624 |
tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt |
38412525 |
T |
|
| Q |
107 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcatatatttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38412524 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt |
38412425 |
T |
|
| Q |
207 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt----nnnnnnnnnnnntaggaacccaaagtctctaagtttggtggttaag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
38412424 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaattaaaaataaaaataaaatagtaacccaaagtctctaagtttggtggttaag |
38412325 |
T |
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| Q |
303 |
tcattgtatcact |
315 |
Q |
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||||||||||||| |
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| T |
38412324 |
tcattgtatcact |
38412312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 8360955 - 8360650
Alignment:
| Q |
7 |
tggacatcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacggaaagtacgtaacatt |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
8360955 |
tggacttcatcatcactatttcgttttgagcctttcatttattt-cttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacgtaacatt |
8360857 |
T |
|
| Q |
107 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcatatatttt |
206 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |
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| T |
8360856 |
caattcatatatgttgacctaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatactttagatagttt |
8360757 |
T |
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| Q |
207 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaattnnnnnnnnnnnntaggaacccaaagtctctaagtttggtggttaagtcat |
306 |
Q |
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| T |
8360756 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt--aaaaaaaaaatagtaacccaaagtctctaagtttggtggttaagtcat |
8360659 |
T |
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| Q |
307 |
tgtatcact |
315 |
Q |
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||||||||| |
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| T |
8360658 |
tgtatcact |
8360650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 7 - 315
Target Start/End: Original strand, 34612022 - 34612334
Alignment:
| Q |
7 |
tggacatcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacggaaagtacgtaacatt |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
34612022 |
tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt |
34612121 |
T |
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| Q |
107 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcatatatttt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34612122 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt |
34612221 |
T |
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| Q |
207 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt----nnnnnnnnnnnntaggaacccaaagtctctaagtttggtggttaag |
302 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
34612222 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaattaaaaataaaaataaaatagtaacccaaagtctctaagtttggtggttaag |
34612321 |
T |
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| Q |
303 |
tcattgtatcact |
315 |
Q |
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||||||||||||| |
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| T |
34612322 |
tcattgtatcact |
34612334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 7 - 315
Target Start/End: Complemental strand, 26908941 - 26908629
Alignment:
| Q |
7 |
tggacatcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacggaaagtacgtaacatt |
106 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
26908941 |
tggacttcatcatcactatttcgttttgagcctttcatttattttcttcttgttcaatgtctagttgctcaaaattgttttacgaaaagtacataacatt |
26908842 |
T |
|
| Q |
107 |
caattcatatatgttggcttaattttttacttttgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcatatatttt |
206 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
26908841 |
caattcatatatgttggcttaattttttactattgccttgtgtaatctcttggctggctgcttgacagaaacaaaaagcaaacaatacttcagatatttt |
26908742 |
T |
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| Q |
207 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaatt----nnnnnnnnnnnntaggaacccaaagtctctaagtttggtggttaag |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| |
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| T |
26908741 |
atttttattaatcccatttagataataaaaatcgattcccatgaagaattaaaaataaaaataaaatagtaacccaaagtctctaagtttggtggttaag |
26908642 |
T |
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| Q |
303 |
tcattgtatcact |
315 |
Q |
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||||||||||||| |
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| T |
26908641 |
tcattgtatcact |
26908629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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