View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8906_low_41 (Length: 304)

Name: NF8906_low_41
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8906_low_41
NF8906_low_41
[»] chr8 (10 HSPs)
chr8 (10-297)||(42455783-42456069)
chr8 (81-157)||(32927834-32927910)
chr8 (81-150)||(26668494-26668563)
chr8 (84-148)||(11791810-11791874)
chr8 (85-147)||(5997360-5997422)
chr8 (93-162)||(35525366-35525435)
chr8 (64-164)||(13384714-13384814)
chr8 (81-129)||(18355925-18355973)
chr8 (81-157)||(35495202-35495278)
chr8 (84-152)||(37684350-37684418)
[»] chr4 (11 HSPs)
chr4 (62-157)||(35064986-35065081)
chr4 (81-147)||(25318989-25319055)
chr4 (84-142)||(26617709-26617767)
chr4 (85-147)||(33560648-33560710)
chr4 (62-152)||(46344904-46344993)
chr4 (84-157)||(2635108-2635181)
chr4 (94-164)||(32818430-32818500)
chr4 (82-140)||(22683806-22683864)
chr4 (81-127)||(42152978-42153024)
chr4 (90-147)||(8330066-8330123)
chr4 (124-152)||(39733709-39733737)
[»] chr5 (11 HSPs)
chr5 (81-157)||(34250418-34250494)
chr5 (62-147)||(10898645-10898730)
chr5 (85-152)||(5468719-5468786)
chr5 (84-147)||(42439695-42439758)
chr5 (122-164)||(9818717-9818759)
chr5 (62-164)||(18851142-18851244)
chr5 (84-157)||(11648027-11648100)
chr5 (63-128)||(39097188-39097253)
chr5 (84-160)||(4848205-4848281)
chr5 (82-150)||(6806313-6806381)
chr5 (120-152)||(13171833-13171865)
[»] chr1 (10 HSPs)
chr1 (81-165)||(47321965-47322049)
chr1 (81-164)||(28083948-28084031)
chr1 (86-144)||(646127-646185)
chr1 (81-152)||(24587851-24587922)
chr1 (62-126)||(47892486-47892550)
chr1 (95-146)||(31362279-31362330)
chr1 (81-144)||(49824831-49824894)
chr1 (84-157)||(6021749-6021822)
chr1 (81-109)||(15478116-15478144)
chr1 (80-132)||(37131875-37131927)
[»] chr7 (9 HSPs)
chr7 (84-157)||(5489913-5489986)
chr7 (84-157)||(45004965-45005038)
chr7 (84-135)||(12306922-12306973)
chr7 (81-164)||(28725112-28725195)
chr7 (83-128)||(17111819-17111864)
chr7 (81-132)||(12306676-12306727)
chr7 (80-150)||(41788259-41788327)
chr7 (84-157)||(41386882-41386955)
chr7 (62-126)||(48158814-48158878)
[»] chr6 (18 HSPs)
chr6 (85-150)||(35098532-35098597)
chr6 (81-157)||(5724697-5724773)
chr6 (84-152)||(25195436-25195504)
chr6 (84-147)||(6653754-6653817)
chr6 (81-164)||(26280547-26280630)
chr6 (81-164)||(765446-765529)
chr6 (81-164)||(4910850-4910933)
chr6 (82-157)||(6654157-6654232)
chr6 (95-157)||(2008569-2008631)
chr6 (90-147)||(2234291-2234348)
chr6 (81-152)||(1485218-1485290)
chr6 (64-123)||(2002566-2002625)
chr6 (61-152)||(7952781-7952872)
chr6 (64-157)||(2008405-2008498)
chr6 (87-128)||(18690620-18690661)
chr6 (81-109)||(31305965-31305993)
chr6 (81-157)||(34620828-34620904)
chr6 (81-157)||(34748265-34748341)
[»] scaffold0168 (1 HSPs)
scaffold0168 (81-157)||(31768-31844)
[»] chr3 (11 HSPs)
chr3 (81-152)||(1441453-1441524)
chr3 (79-164)||(41115422-41115507)
chr3 (64-152)||(25359646-25359733)
chr3 (84-144)||(54596763-54596823)
chr3 (82-157)||(7717388-7717462)
chr3 (61-144)||(7717453-7717536)
chr3 (81-151)||(32523414-32523484)
chr3 (81-133)||(3845203-3845255)
chr3 (84-159)||(33548188-33548264)
chr3 (84-152)||(35264483-35264551)
chr3 (84-164)||(40736597-40736677)
[»] chr2 (14 HSPs)
chr2 (89-157)||(680344-680412)
chr2 (96-164)||(31453340-31453408)
chr2 (81-157)||(42740919-42740995)
chr2 (84-135)||(7630361-7630412)
chr2 (63-126)||(15928532-15928595)
chr2 (81-147)||(36987189-36987255)
chr2 (81-157)||(2002762-2002838)
chr2 (84-163)||(33502909-33502989)
chr2 (81-149)||(37420272-37420340)
chr2 (62-147)||(42774910-42774997)
chr2 (64-128)||(43501068-43501132)
chr2 (81-152)||(10644546-10644616)
chr2 (93-152)||(32777924-32777983)
chr2 (84-149)||(1976940-1977005)


Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 42455783 - 42456069
Alignment:
Q  10 gatggacatcacttacttttgcagcttttgacatgttttgttgcttttgagtaaaattgattatggagcaatagaattgattttgacatgtttggttgct 109  Q
    |||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42455783 gatgtacattacttacttttgcagcttttaacatgttttgttgcttttgagtaaaattgattatggagcagtagaattgattttgacatgtttggttgct 42455882  T
Q  110 tttgagtaggattgattctgcctccataattgattctacttgatgctataatttgccccatagattttgacatatgtcatagcttttctctttttgtgtg 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  42455883 tttgagtaggattgattctgcctccataattgattctacttgatgctataatttgccccatagattttgacatgt-tcatagcttttctctttttgtgtg 42455981  T
Q  210 aacttcttaataaataaatcatcatgccccacatataaaaattattggatccgtcactgtacacttgtgaacatatctgtgctcctcc 297  Q
    |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42455982 aacttcttaataaataaatcatcatgcctcgcatataaaaattattggatccgtcactgtacacttgtgaacatatctgtgctcctcc 42456069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 32927834 - 32927910
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    ||||||||| | |||||||||||||||||||  ||||| ||||||| |||||| ||| |||||||||||||| ||||    
T  32927834 tagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagcta 32927910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 150
Target Start/End: Original strand, 26668494 - 26668563
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 150  Q
    ||||||||||| | ||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||    
T  26668494 tagaattgattctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctactt 26668563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 148
Target Start/End: Complemental strand, 11791874 - 11791810
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctac 148  Q
    ||||||||||| ||||||||||||| ||||| ||  ||||| | ||||||||||| |||||||||    
T  11791874 aattgattttggcatgtttggttgcctttgaatataattgaatttgcctccataactgattctac 11791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 5997422 - 5997360
Alignment:
Q  85 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    |||||||||||||||||||| || |||||||||  ||||||| |||||| | || ||||||||    
T  5997422 attgattttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattcta 5997360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Original strand, 35525366 - 35525435
Alignment:
Q  93 tgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatt 162  Q
    ||||||||||| ||| | | |||||| ||||||||| || ||| |||||||| ||||||| |||||||||    
T  35525366 tgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaagctataatt 35525435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 164
Target Start/End: Complemental strand, 13384814 - 13384714
Alignment:
Q  64 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataattt 163  Q
    |||||||| |||||   ||||||||||| ||||||||||||||| | | |||| | |||  ||||  ||||| ||||||||||| |||| |||| |||||    
T  13384814 aattgattttggaggtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaattt 13384715  T
Q  164 g 164  Q
    |    
T  13384714 g 13384714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 18355973 - 18355925
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctg 129  Q
    |||||||||||||||||||| || ||| ||| |||||| ||||||||||    
T  18355973 tagaattgattttgacatgtatgattgttttcgagtagaattgattctg 18355925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 35495202 - 35495278
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||||| ||| || |  | ||| ||| ||| |||||| | |||||||||||||||| ||||    
T  35495202 tagaattgattttgacatgttttgtttctctaaattagaattaattttgcctctagaattgattctacttgaagcta 35495278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Original strand, 37684350 - 37684418
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||  || ||||||||||| | | |||||| ||||||| || ||||| ||||||||||||||||    
T  37684350 aattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattctacttga 37684418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 8e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 35064986 - 35065081
Alignment:
Q  62 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    ||||||||||||||||   ||||||||||| |||||| |||||||||||| |||||| ||||||| |||||| |||||||||| ||||||| ||||    
T  35064986 aaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagcta 35065081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 147
Target Start/End: Original strand, 25318989 - 25319055
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||| || ||||| |||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattcta 25319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 84 - 142
Target Start/End: Complemental strand, 26617767 - 26617709
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattga 142  Q
    ||||||||||||||||||||| ||||||| | ||| ||||||| |||||||||||||||    
T  26617767 aattgattttgacatgtttggatgcttttcaatagaattgattttgcctccataattga 26617709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 33560710 - 33560648
Alignment:
Q  85 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    ||||||||||||||||||||||||| | |||||| ||||||| |||||| | |||||||||||    
T  33560710 attgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattcta 33560648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 152
Target Start/End: Complemental strand, 46344993 - 46344904
Alignment:
Q  62 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||||||||||   || |||| ||| |||||||||||||||||||  ||||  ||||||| ||||||||||||| |||||||||||    
T  46344993 aaaattgattatggaggtgtataattaattctgacatgtttggttgctttcaagtataattgattttgcctccataatt-attctacttga 46344904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 2635108 - 2635181
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||| |||||||| ||||| | ||||| |||||||| |||||||| | ||||| ||||    
T  2635108 aattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgattatgcttgaagcta 2635181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 164
Target Start/End: Complemental strand, 32818500 - 32818430
Alignment:
Q  94 gacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||| ||||||| |||| |||||| ||||||| |||||||| ||||||||||| |||| |||| ||||||    
T  32818500 gacatatttggtttctttcgagtagaattgattttgcctccagaattgattctatttgaagctagaatttg 32818430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 140
Target Start/End: Original strand, 22683806 - 22683864
Alignment:
Q  82 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataatt 140  Q
    |||||||||||||||||||| | ||| |||||||||  ||||||| |||||||| ||||    
T  22683806 agaattgattttgacatgttggtttgtttttgagtaaaattgattttgcctccagaatt 22683864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 127
Target Start/End: Complemental strand, 42153024 - 42152978
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattc 127  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  42153024 tagaatttattttgacatgtttgattgctcttgagtagaattgattc 42152978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 8330066 - 8330123
Alignment:
Q  90 ttttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    |||| ||||||||||||||| |  ||||  |||||||||||||||||||| |||||||    
T  8330066 tttttacatgtttggttgctctcaagtaaaattgattctgcctccataatggattcta 8330123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 152
Target Start/End: Complemental strand, 39733737 - 39733709
Alignment:
Q  124 attctgcctccataattgattctacttga 152  Q
    |||||||||||||||||||||||||||||    
T  39733737 attctgcctccataattgattctacttga 39733709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 34250494 - 34250418
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||| ||||||||||||||||| || | |||||| ||||||| |||||| | |||||||||||||||||||||    
T  34250494 tagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctctagaattgattctacttgatgcta 34250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 10898645 - 10898730
Alignment:
Q  62 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    |||||||||| | ||||  | ||||| ||||||||||||||||||||| | |||||  ||||||| |||||| | |||||||||||    
T  10898645 aaaattgattctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattcta 10898730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 152
Target Start/End: Original strand, 5468719 - 5468786
Alignment:
Q  85 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||| ||||||||||| ||| | | || ||  |||||||||||||||||| ||||||||||||||    
T  5468719 attgattatgacatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttga 5468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 84 - 147
Target Start/End: Complemental strand, 42439758 - 42439695
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    ||||||||||||||  ||||||||||| ||| ||| ||||||| | |||||| |||||||||||    
T  42439758 aattgattttgacacatttggttgcttgtgactagaattgatttttcctccagaattgattcta 42439695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 122 - 164
Target Start/End: Original strand, 9818717 - 9818759
Alignment:
Q  122 tgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttg 9818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 164
Target Start/End: Complemental strand, 18851244 - 18851142
Alignment:
Q  62 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataat 161  Q
    ||||||||||||||||   ||||||||| | |||| |||||||||||| |  | ||| |||||| ||  | | |||||||||||||||||| ||||| ||    
T  18851244 aaaattgattatggagttgtagaattgactctgacgtgtttggttgctatcaattagaattgatcctatccctataattgattctacttgaagctatgat 18851145  T
Q  162 ttg 164  Q
    |||    
T  18851144 ttg 18851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 11648027 - 11648100
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||| ||| |  | |||||||||||||||| ||||    
T  11648027 aattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaaattgattctacttgaagcta 11648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 39097188 - 39097253
Alignment:
Q  63 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattct 128  Q
    ||||||||||| |||   ||||||||||||||||||||||||||| |||   |||| |||||||||    
T  39097188 aaattgattatagaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgattct 39097253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 4848281 - 4848205
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataa 160  Q
    |||||||| |||||||||||  | || | |||||| ||||||| ||  ||||||||||||||||||| | |||||||    
T  4848281 aattgattctgacatgtttgactactctcgagtagaattgattttggttccataattgattctacttaaagctataa 4848205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 150
Target Start/End: Original strand, 6806313 - 6806381
Alignment:
Q  82 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 150  Q
    |||||||||| ||||||||||||||  | ||||||   |||||||||||||  | ||||||||||||||    
T  6806313 agaattgattctgacatgtttggttattcttgagtgaaattgattctgcctttagaattgattctactt 6806381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 152
Target Start/End: Complemental strand, 13171865 - 13171833
Alignment:
Q  120 attgattctgcctccataattgattctacttga 152  Q
    |||||||||||||||| ||||||||||||||||    
T  13171865 attgattctgcctccaaaattgattctacttga 13171833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 81 - 165
Target Start/End: Complemental strand, 47322049 - 47321965
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttgc 165  Q
    |||||||||||||||||||||| |||| | | |||||| ||||||||||| || |||||||||| ||||||| |||| |||||||    
T  47322049 tagaattgattttgacatgttttgttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgc 47321965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 28084031 - 28083948
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||||||||| |||||| |||||||| ||| |||||| ||||||| || || | ||||||||||||||||| |||| ||||||    
T  28084031 tagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttg 28083948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 646127 - 646185
Alignment:
Q  86 ttgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 144  Q
    |||||| ||||||||||||||| |||||||||| ||||||| |||||||| ||||||||    
T  646127 ttgattatgacatgtttggttgtttttgagtagaattgattttgcctccagaattgatt 646185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 24587851 - 24587922
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||| | || | ||| || |||||||||||||    
T  24587851 tagaattgattgtgacatgtttggttgctcttgagtagaattgactttgacgccagaactgattctacttga 24587922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 47892550 - 47892486
Alignment:
Q  62 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 126  Q
    |||||||||||||||    |||||||||||  | ||||||||||||||||||||||| |||||||    
T  47892550 aaaattgattatggaagtgtagaattgattccgtcatgtttggttgcttttgagtagaattgatt 47892486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 31362330 - 31362279
Alignment:
Q  95 acatgtttggttgcttttgagtaggattgattctgcctccataattgattct 146  Q
    |||||||||||||||||   |||| ||||||| |||||||||||||||||||    
T  31362330 acatgtttggttgctttcatgtagaattgattttgcctccataattgattct 31362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 49824831 - 49824894
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 144  Q
    |||||||||||||||||| |||| ||||||| |||||  ||||||| || ||||| ||||||||    
T  49824831 tagaattgattttgacatctttgtttgctttcgagtacaattgattttggctccaaaattgatt 49824894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 6021749 - 6021822
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||| ||||| ||| |||  ||||| ||||||| |||||| | ||| |||||||||||| ||||    
T  6021749 aattgattttgacaagtttgattgatttcaagtagaattgattttgcctctagaatcgattctacttgaagcta 6021822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 15478144 - 15478116
Alignment:
Q  81 tagaattgattttgacatgtttggttgct 109  Q
    |||||||||||||||||||||||||||||    
T  15478144 tagaattgattttgacatgtttggttgct 15478116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 37131875 - 37131927
Alignment:
Q  80 atagaattgattttgacatgtttggttgcttttgagtaggattgattctgcct 132  Q
    ||||||||||||||| |||||||||||||| | ||||||  |||||| |||||    
T  37131875 atagaattgattttggcatgtttggttgctctcgagtagatttgattttgcct 37131927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 5489986 - 5489913
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||| | |||||||||||||||  ||||||| ||| ||| |||||||| |||||||||||||||||||||    
T  5489986 aattgattcttacatgtttggttgctcctgagtagaattaattttgcctccaaaattgattctacttgatgcta 5489913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 45004965 - 45005038
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||||||||| | || ||| ||||||| ||||| || |||||||||||||||| ||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattctacttgaagcta 45005038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 12306922 - 12306973
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctcca 135  Q
    |||||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  12306922 aattgattttgacatgtttggttgctcttgagtagaattgattttgcctcca 12306973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 28725195 - 28725112
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    |||||||||||| |||||||||||||| ||| |  ||| |||||||| |||||||  ||||||| ||||||| |||| ||||||    
T  28725195 tagaattgatttagacatgtttggttgttttcgtttagaattgattcagcctccaatattgattatacttgaagctagaatttg 28725112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 17111819 - 17111864
Alignment:
Q  83 gaattgattttgacatgtttggttgcttttgagtaggattgattct 128  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||    
T  17111819 gaattgattctgacatgtttggttgctttcgagtagaattgattct 17111864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 132
Target Start/End: Original strand, 12306676 - 12306727
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcct 132  Q
    ||||||||||||||||||||||||||||| |  ||||| ||||||| |||||    
T  12306676 tagaattgattttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 41788259 - 41788327
Alignment:
Q  80 atagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 150  Q
    ||||||||||||||| |||||||||||||| |||||||| | ||||  || ||| | ||||||||||||||    
T  41788259 atagaattgattttggcatgtttggttgctcttgagtagaaatgat--tgtctcaagaattgattctactt 41788327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 157
Target Start/End: Complemental strand, 41386955 - 41386882
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||| ||||||||||| ||||||| |||||  |||||||   ||| || |||||||||||||||| ||||    
T  41386955 aattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagcta 41386882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 48158814 - 48158878
Alignment:
Q  62 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 126  Q
    ||||||||||||| ||   || |||||||||||||||||||||||||| | |||||  |||||||    
T  48158814 aaaattgattatgaaggcgtaaaattgattttgacatgtttggttgctctcgagtaaaattgatt 48158878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 35098597 - 35098532
Alignment:
Q  85 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 150  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||| ||||  |||||||||||||    
T  35098597 attgattttgacatgtttggttacttttgagtagaattgattttgcttccaggattgattctactt 35098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 5724773 - 5724697
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    ||||||||||| |||||||||||| ||||||   |||| ||||||| |||||||| |||||||||||||||| ||||    
T  5724773 tagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattctacttgaagcta 5724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 25195504 - 25195436
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    |||||||| ||||||||||||||||| | |||||  |||||||||||||||  ||||||||||||||||    
T  25195504 aattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattctacttga 25195436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 147
Target Start/End: Original strand, 6653754 - 6653817
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    ||||||||||||| |||||||||||| |  ||||| |||||||||||||| |||||||||||||    
T  6653754 aattgattttgacttgtttggttgctgtcaagtagaattgattctgcctctataattgattcta 6653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 26280547 - 26280630
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||||||||||||||||||||| ||| ||||  |||| ||||||| |||||| | ||||||||| |||||| |||| ||||||    
T  26280547 tagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttg 26280630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 765529 - 765446
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||||||||| |||| ||||||||||||||| ||||| | || || || ||| | |||||||||||||||| ||||| |||||    
T  765529 tagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttg 765446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 164
Target Start/End: Original strand, 4910850 - 4910933
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||||||||| |||||||||||||||   |  | ||| |||||||||||||| | |||||||||||||||| ||||| |||||    
T  4910850 tagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaattgattctacttgaagctatgatttg 4910933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 6654232 - 6654157
Alignment:
Q  82 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||| || |||||||||||||| |||||||| ||||||| | ||| || |||| ||||||||||| ||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagcta 6654157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 157
Target Start/End: Complemental strand, 2008631 - 2008569
Alignment:
Q  95 acatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||  ||||| ||||||| |||||||| |||| ||||||| ||||||||    
T  2008631 acatgtttggttgctttctagtagaattgattttgcctccagaattaattctacgtgatgcta 2008569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 147
Target Start/End: Complemental strand, 2234348 - 2234291
Alignment:
Q  90 ttttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||||  |||||||||||    
T  2234348 ttttgatatgtttggttgctcttgagtagaattgattttgcctcctgaattgattcta 2234291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 1485290 - 1485218
Alignment:
Q  81 tagaattgatt-ttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||||| |||||||||||| ||||| |||||||| ||| ||| |||||  | ||||||||||||||||    
T  1485290 tagaattgattcttgacatgtttgtttgctcttgagtagaattaattttgcctttagaattgattctacttga 1485218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 2002625 - 2002566
Alignment:
Q  64 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattg 123  Q
    |||||||| |||||   ||||||||||||||||||||||||||| ||| |||||| ||||    
T  2002625 aattgattttggaggcgtagaattgattttgacatgtttggttgttttcgagtagaattg 2002566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 7952872 - 7952781
Alignment:
Q  61 taaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||| |||||||||   || |||||||| ||||||||||| ||| |||||||| |  || ||| |||||||| |||| |||||||||||    
T  7952872 taaaattaattatggaggtgtaaaattgattatgacatgtttgattggttttgagttgatttaattttgcctccaaaatttattctacttga 7952781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 2008498 - 2008405
Alignment:
Q  64 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||| |||||   |||||||| || ||||||||||| ||| ||| |||||| ||| ||| || |||||||||  ||||||||||| ||||    
T  2008498 aattgattttggaggtgtagaattgtttctgacatgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagcta 2008405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 128
Target Start/End: Original strand, 18690620 - 18690661
Alignment:
Q  87 tgattttgacatgtttggttgcttttgagtaggattgattct 128  Q
    |||||||||||||||||||||||||  ||||| |||||||||    
T  18690620 tgattttgacatgtttggttgctttcaagtagaattgattct 18690661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 109
Target Start/End: Complemental strand, 31305993 - 31305965
Alignment:
Q  81 tagaattgattttgacatgtttggttgct 109  Q
    |||||||||||||||||||||||||||||    
T  31305993 tagaattgattttgacatgtttggttgct 31305965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 34620828 - 34620904
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||||||||| || |  | ||| ||| ||| |||||||  |||||||||||| ||| ||||    
T  34620828 tagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagcta 34620904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 34748265 - 34748341
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||||||||| || |  | ||| ||| ||| |||||||  |||||||||||| ||| ||||    
T  34748265 tagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagcta 34748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 31768 - 31844
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    ||||||||||| ||||||||||||||| | | |||||  |||||||||||||||| |||||||| ||||||| ||||    
T  31768 tagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagcta 31844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 152
Target Start/End: Complemental strand, 1441524 - 1441453
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||| || ||| ||||| || |||||||||    
T  1441524 tagaattgagtttgacatgtttggtttcttttgagtagaattgattttgtctctataatcgactctacttga 1441453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 41115507 - 41115422
Alignment:
Q  79 aatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||||| |||||||||||||||||| || |||  ||||| ||||||| ||| |  | |||||||||||||||| |||| ||||||    
T  41115507 aatagaactgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaagctagaatttg 41115422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 152
Target Start/End: Complemental strand, 25359733 - 25359646
Alignment:
Q  64 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||||||||  ||||||||| || |  |||||||||||||| |  | ||  |||||||||||||||| ||||||||||||||||    
T  25359733 aattgattatggaggtatagaattgcttctaccatgtttggttgctgtcaaataa-attgattctgcctccagaattgattctacttga 25359646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 54596763 - 54596823
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 144  Q
    |||||||| ||||||||||||||| |||  ||||| |||||||||||||||| || |||||    
T  54596763 aattgattatgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgatt 54596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 82 - 157
Target Start/End: Complemental strand, 7717462 - 7717388
Alignment:
Q  82 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||| |||| |    |||||| ||||||| |||||||| |||||||||||||||| ||||    
T  7717462 agaattgattttgacatgtt-ggttccgccagagtagaattgattttgcctccagaattgattctacttgaagcta 7717388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 61 - 144
Target Start/End: Complemental strand, 7717536 - 7717453
Alignment:
Q  61 taaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 144  Q
    ||||||||||| | |||   |||| ||||||||||||||||||||| ||   |||||| ||||||| |||||||| ||||||||    
T  7717536 taaaattgattgtagaggtttagagttgattttgacatgtttggttcctccagagtagaattgattttgcctccagaattgatt 7717453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 32523484 - 32523414
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttg 151  Q
    |||||||||||  ||| |||||||||||||| |||||  || |||| |||||||||||||  |||||||||    
T  32523484 tagaattgattcagacttgtttggttgctttcgagtaaaatagattttgcctccataattatttctacttg 32523414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 3845255 - 3845203
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctc 133  Q
    ||||||||||||||||||||||| ||| | |  ||||| ||||||||||||||    
T  3845255 tagaattgattttgacatgtttgtttgatctcaagtagaattgattctgcctc 3845203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 159
Target Start/End: Original strand, 33548188 - 33548264
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattct-acttgatgctata 159  Q
    ||||||||||||||||||||| |||| || ||||| ||||||| | ||| || ||| |||||| |||||| ||||||    
T  33548188 aattgattttgacatgtttggatgctattaagtagaattgatttttccttcaaaatggattctaacttgaagctata 33548264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 152
Target Start/End: Complemental strand, 35264551 - 35264483
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    |||||||| | ||||||||||||||| | ||  || |||||||||||||||| |  |||||||||||||    
T  35264551 aattgattctcacatgtttggttgctctcgaagagaattgattctgcctccaaatatgattctacttga 35264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 40736677 - 40736597
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    ||||||||||||| |||||| ||| | | |||||  ||||||| ||| |||  ||||||||||||||||  ||||||||||    
T  40736677 aattgattttgacgtgtttgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttg 40736597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 680412 - 680344
Alignment:
Q  89 attttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||| |||||||| || ||| | ||||| |||||||| |||||||||||||||| ||||    
T  680412 attttgacatgtttagttgctttcgaatagaactgattttgcctccagaattgattctacttgaagcta 680344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 31453340 - 31453408
Alignment:
Q  96 catgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 164  Q
    |||||||||||| | |||||||| ||| ||| |||||| |||||||||||||||||| |||| ||||||    
T  31453340 catgtttggttgatgttgagtagaatttattttgcctctataattgattctacttgaagctaaaatttg 31453408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 42740919 - 42740995
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||||||||||||||  || ||||| || ||||| ||| | | ||||||||||||||||||||||| ||||    
T  42740919 tagaattgattttgacatgttccgtagctttcgaataggactgaattttcctccataattgattctacttgaagcta 42740995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 84 - 135
Target Start/End: Original strand, 7630361 - 7630412
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctcca 135  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgattttgcctcca 7630412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 15928595 - 15928532
Alignment:
Q  63 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 126  Q
    ||||||||| |||||   ||||||||||||||||||||||||||| | |||||||| |||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 147
Target Start/End: Complemental strand, 36987255 - 36987189
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 147  Q
    |||||||||||||||||||||||| | ||||||||||  ||||||| ||| |||| || ||||||||    
T  36987255 tagaattgattttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattcta 36987189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 2002838 - 2002762
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 157  Q
    |||||||||| |||||||  |||||||||||  ||||| ||||||| |||||||| |  ||||||||||||| ||||    
T  2002838 tagaattgatgttgacatacttggttgctttctagtagaattgattttgcctccagacctgattctacttgaagcta 2002762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 163
Target Start/End: Complemental strand, 33502989 - 33502909
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattct-acttgatgctataattt 163  Q
    |||||||||||||||||||||||||| | |||||  | ||||| ||| |||| |||||||||| |||||| |||| |||||    
T  33502989 aattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaattt 33502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 149
Target Start/End: Complemental strand, 37420340 - 37420272
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctact 149  Q
    |||||||||||||||||||||||| | |  | |||||| ||||||| |||||| | |||||||||||||    
T  37420340 tagaattgattttgacatgtttggcttccctagagtagaattgattttgcctctagaattgattctact 37420272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 147
Target Start/End: Complemental strand, 42774997 - 42774910
Alignment:
Q  62 aaaattgattatggagcaatagaattgattttgacatgtttggttg--cttttgagtaggattgattctgcctccataattgattcta 147  Q
    |||||||||| | |||  ||||||||||||||||||||||  ||||  || |||||||  ||||||||||||| || |||||||||||    
T  42774997 aaaattgattctagaggtatagaattgattttgacatgttccgttgctctcttgagtataattgattctgccttcaaaattgattcta 42774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 128
Target Start/End: Original strand, 43501068 - 43501132
Alignment:
Q  64 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattct 128  Q
    |||||||  ||||||  ||||||||||| |||||||||||||||||||  ||||| |||||||||    
T  43501068 aattgatcctggagctgtagaattgattctgacatgtttggttgctttcaagtagaattgattct 43501132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 81 - 152
Target Start/End: Original strand, 10644546 - 10644616
Alignment:
Q  81 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||| | |||||||||||  || ||| |||||| |||||||||||||||| |||| |||||||||||    
T  10644546 tagaattgactctgacatgtttgtctg-tttcgagtagaattgattctgcctccaaaatttattctacttga 10644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 93 - 152
Target Start/End: Original strand, 32777924 - 32777983
Alignment:
Q  93 tgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 152  Q
    ||||||||||||||| ||| | |||| ||||||| ||||||||||||| |||| ||||||    
T  32777924 tgacatgtttggttgttttcgtgtagaattgattttgcctccataatttattcaacttga 32777983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 149
Target Start/End: Complemental strand, 1977005 - 1976940
Alignment:
Q  84 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctact 149  Q
    |||||||||||||||||||| || |||   ||||| ||||||| || ||||| |||||||||||||    
T  1977005 aattgattttgacatgtttgctttcttaaaagtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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