View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8906_low_54 (Length: 246)
Name: NF8906_low_54
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_54 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 34955907 - 34955671
Alignment:
| Q |
1 |
cagcagaaataaatgatataatatacggcatatgacttcctattatttttctct--gtattttaaatattatgccgaaacgtaagctgttttgcactctg |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34955907 |
cagcagaaataaatgatataatatacggcatatgacttcctattatttttctctctgtattttaaatattatgccgaaacataagctgttttgcactctg |
34955808 |
T |
|
| Q |
99 |
caggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaatgaacatgtcgcatgccatacaccatttatcttttg |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
34955807 |
caggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaatgaacatgtcgcatgccgtacaccatttatcttttg |
34955708 |
T |
|
| Q |
199 |
gaaagaaattgtcacctaagcttatgagtgatgtcca |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34955707 |
gaaagaaattgtcacctaagcttatgagtgatgtcca |
34955671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 31391666 - 31391785
Alignment:
| Q |
97 |
tgcaggttccaggaaacttgatcatctcagcaagatccgatgcccattcatttgatgcttctcaaatgaacatgtcgcatgccatacaccatttatcttt |
196 |
Q |
| |
|
||||||||||||||| |||| | ||||||| ||||| ||||| |||||||||||||||||||||||||||||||| |||| ||| ||||| ||||||| |
|
|
| T |
31391666 |
tgcaggttccaggaagcttggttgtctcagctagatcagatgcacattcatttgatgcttctcaaatgaacatgtcacatgtcatcaaccatctatcttt |
31391765 |
T |
|
| Q |
197 |
tggaaagaaattgtcaccta |
216 |
Q |
| |
|
|||||| ||| || |||||| |
|
|
| T |
31391766 |
tggaaaaaaagtgacaccta |
31391785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University