View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8906_low_61 (Length: 231)
Name: NF8906_low_61
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_61 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr4 (9 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
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| [»] chr6 (6 HSPs) |
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| [»] scaffold0014 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 18663327 - 18663103
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663327 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccctatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
18663228 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663227 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
18663128 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18663127 |
cacatcatcttacatctaacacacc |
18663103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 18663528 - 18663304
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663528 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttccca |
18663429 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663428 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
18663329 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
18663328 |
cacatcatcttacatctaaaacacc |
18663304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 18663696 - 18663505
Alignment:
| Q |
40 |
ccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtct |
139 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18663696 |
ccaacaatccctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtct |
18663597 |
T |
|
| Q |
140 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18663596 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacacc |
18663505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 18663126 - 18662938
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||| |||||| | |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
18663126 |
acatcatcttacatctaacacaccttcaaatatccaacttccacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttccca |
18663027 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
18663026 |
cctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacctacaaatatccaatctccccactctac |
18662938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 13656847 - 13656623
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656847 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccatatatacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
13656748 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13656747 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
13656648 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13656647 |
cacatcatcttacatctaacacacc |
13656623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 13671493 - 13671269
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671493 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttccca |
13671394 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671393 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
13671294 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
13671293 |
cacatcatcttacatctaacacacc |
13671269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 231
Target Start/End: Complemental strand, 13671694 - 13671470
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671694 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttccca |
13671595 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671594 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
13671495 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
13671494 |
cacatcatcttacatctaaaacacc |
13671470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 5739512 - 5739321
Alignment:
| Q |
40 |
ccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtct |
139 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5739512 |
ccaacaatccctatctacaaagcaacctacacatcatcccatatctcaaacacatacaaatttcccacctttcctctctacttcaagtccacaaatgtct |
5739413 |
T |
|
| Q |
140 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5739412 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaacacacc |
5739321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 13671862 - 13671671
Alignment:
| Q |
40 |
ccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtct |
139 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13671862 |
ccaacaatccctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtct |
13671763 |
T |
|
| Q |
140 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
13671762 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacacc |
13671671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 40 - 231
Target Start/End: Complemental strand, 13657015 - 13656824
Alignment:
| Q |
40 |
ccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtct |
139 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13657015 |
ccaacaatccctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtct |
13656916 |
T |
|
| Q |
140 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
13656915 |
actgtccatgctcccacttctcaaatacctacaaatatccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacacc |
13656824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 5739344 - 5739156
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| ||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
5739344 |
acatcatcttacatctaacacaccttcaaatatccaacaatcgctatctacaaagcagcctacacatcatctcatatctcaaacacatacaaatttccca |
5739245 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||| ||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
5739244 |
cctttcctctctactccaagtccacaaatgtctacaattcatactcccacctctcaaatacctacaaatatccaatctccccactctac |
5739156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 13671292 - 13671104
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||| |||||| | |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
13671292 |
acatcatcttacatctaacacaccttcaaatatccaacttccacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttccca |
13671193 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
13671192 |
cctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacctacaaatatccaatctccccactctac |
13671104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 195
Target Start/End: Complemental strand, 13656646 - 13656458
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||| |||| | |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
13656646 |
acatcatcttacatctaacacaccttcaaatatccaacttccacaacctacaaggcaaaagaaacatcatcccatatctcaaacatttacaaatttccca |
13656547 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
13656546 |
cctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacctacaaatatccaatctccccactctac |
13656458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 37461184 - 37461408
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461184 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccttatttacaaagcatcctacacatcatcccatatctcaaacacatacaaacttccca |
37461283 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461284 |
cctttcctctctacttcaagtccacaaatgtctactttccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
37461383 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
37461384 |
cacatcatcttacatctaacacacc |
37461408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 81 - 231
Target Start/End: Original strand, 37461057 - 37461207
Alignment:
| Q |
81 |
tatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaataccca |
180 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37461057 |
tatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctaatgtccatgctcccacttctcaaatacctacaaataccca |
37461156 |
T |
|
| Q |
181 |
acaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
37461157 |
acaaccccactctacaatgaaacctacacatcatcttacatctaaaacacc |
37461207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 37461385 - 37461573
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||| ||||| | |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
37461385 |
acatcatcttacatctaacacaccttcaaatatccaatttccacaacctacaaggcaactgaaacatcatcccatatctcaaacatttacaaatttccca |
37461484 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
37461485 |
cctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacctacaaatatccaatctccccactctac |
37461573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 18581513 - 18581737
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581513 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttccca |
18581612 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581613 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
18581712 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
18581713 |
cacatcatcttacatctaacacacc |
18581737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 18581345 - 18581536
Alignment:
| Q |
40 |
ccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtct |
139 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18581345 |
ccaacaatccctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtct |
18581444 |
T |
|
| Q |
140 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
18581445 |
actgtccatgctcccatttctcaaatacctacaaatacccaacaaccccgctctacaatgaaacctacacatcatcttacatctaaaacacc |
18581536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 18581714 - 18581902
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||| |||| | | |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
18581714 |
acatcatcttacatctaacacaccttcaaatatccaacttccacaacctacaaggcaatcgaaacatcatcccatatctcaaacatttacaaatttccca |
18581813 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||| ||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
18581814 |
cctttcctctctactccaagtccacaaatgtctacaattcatgctctcacctctcaaatacctacaaatatccaatctccccactctac |
18581902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 12923589 - 12923813
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923589 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccctatctacaaagcagcctacacatcatcccatatctcaaacacatacaaacttccca |
12923688 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923689 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
12923788 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||| ||||| |
|
|
| T |
12923789 |
cacatcatcttacatctaaaacacc |
12923813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 231
Target Start/End: Original strand, 12923790 - 12924011
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| | |||||||||||||| |
|
|
| T |
12923790 |
acatcatcttacatctaaaacaccttcaaatatccaacaatccctatttacaaagcaacctacacatcatccc---tctcaaaaaaatacaaacttccca |
12923886 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923887 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaaccta |
12923986 |
T |
|
| Q |
207 |
cacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
12923987 |
cacatcatcttacatctaacacacc |
12924011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 40 - 231
Target Start/End: Original strand, 12923421 - 12923612
Alignment:
| Q |
40 |
ccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtct |
139 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12923421 |
ccaacaatccctatctacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtct |
12923520 |
T |
|
| Q |
140 |
actgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
|
|
| T |
12923521 |
actatccatgctcccacttctcaaatacctacaaatacccaacaaccccactctacaatgaaacctacacatcatcttacatctaaaacacc |
12923612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 12923988 - 12924176
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||| ||||| | |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
12923988 |
acatcatcttacatctaacacaccttcaaatatccaacttccacaacctacaaggcaactgaaacatcatcccatatctcaaacatttacaaatttccca |
12924087 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||| ||| |||| ||||||||||| |
|
|
| T |
12924088 |
cctttcctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacctacatatatccaatctccccactctac |
12924176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 19540801 - 19540742
Alignment:
| Q |
166 |
acctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaa |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||| |
|
|
| T |
19540801 |
acctacaaatacccaacaaccccactctacaaggcaacctacatatcatctcacatctaa |
19540742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 19540702 - 19540644
Alignment:
| Q |
166 |
acctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaa |
225 |
Q |
| |
|
||||||||||| | |||||| |||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
19540702 |
acctacaaatatc-aacaacaccactctacaaggaaatctacacatcatcttacatctaa |
19540644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 51 - 231
Target Start/End: Original strand, 22565 - 22745
Alignment:
| Q |
51 |
tatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttcccacctttcctctctacttcaagtccacaaatgtctactgtccatgc |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
22565 |
tatttacaaagcaacctacacatcatcccatatctcaaacacatactaacttcccacctttcctctctacttcaagtccacaaatgtctactttccatgc |
22664 |
T |
|
| Q |
151 |
tcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22665 |
tcccacttctcaaatacctacaaatacccaacaaccccactctacaaggaaacctacacatcatcttacatctaacacacc |
22745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 195
Target Start/End: Original strand, 22722 - 22910
Alignment:
| Q |
7 |
acatcatcttacatctaaaacaccttcaaatatccaaaaatccttatttacaaagcaacctacacatcatcccatatctcaaacacatacaaacttccca |
106 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| | | ||||| |||||| | |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
22722 |
acatcatcttacatctaacacaccttcaaatatccaatttccacaacctacaaggcaaccgaaacatcatcccatatctcaaacatttacaaatttccca |
22821 |
T |
|
| Q |
107 |
cctttcctctctacttcaagtccacaaatgtctactgtccatgctcccacttctcaaatacctacaaatacccaacaaccccactctac |
195 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||| ||||||||||| |
|
|
| T |
22822 |
cctttgctctctactccaagtccacaaatgtctacaattcatgctcccacctctcaaatacctacaaatatccaatctccccactctac |
22910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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