View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_63 (Length: 226)
Name: NF8906_low_63
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_63 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 7293116 - 7292894
Alignment:
| Q |
1 |
atcaattgacataatttagctctatatagaagcaaaatatcagttttctcagtaacaacacatttgttacttttggttactgaccataccaactctgagt |
100 |
Q |
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|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7293116 |
atcaattgacatgatttagctccatatagaagcaaaatatcagttttctcagtaaca---catttgttacttttggttactgaccataccaactctgagt |
7293020 |
T |
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| Q |
101 |
ttccttcttcttcccctcaatctactttaaatatctctcggatacagtcgttcctaatcagatacatccacctaagaaatcctcttattcactgcactta |
200 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7293019 |
ttccttcttcttcccctcaatctactttaactatctctcggatacagtcgttcctaatcagatacatccacctaagaaatcctcttattcactacactta |
7292920 |
T |
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| Q |
201 |
atctctgttcttctcaataattcatc |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
7292919 |
atctctgttcttctcaataattcatc |
7292894 |
T |
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