View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8906_low_67 (Length: 203)

Name: NF8906_low_67
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8906_low_67
NF8906_low_67
[»] chr4 (7 HSPs)
chr4 (70-203)||(5197496-5197629)
chr4 (71-203)||(5184097-5184229)
chr4 (70-203)||(5174755-5174882)
chr4 (70-203)||(4840640-4840767)
chr4 (70-203)||(4855142-4855275)
chr4 (70-203)||(5215641-5215774)
chr4 (70-203)||(5161816-5161949)


Alignment Details
Target: chr4 (Bit Score: 102; Significance: 7e-51; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 5197629 - 5197496
Alignment:
Q  70 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 169  Q
    ||||||||| |||||||||||||||||| |||| ||||||||||| ||||||| || ||||||||||||||||||||||||||| |||||||||||||||    
T  5197629 ttacaatatgcaaatatttgagactccacataatgtttcaacaggaactatggccactcttcaatacaatggaaaagttggaaagaatctacgcataaac 5197530  T
Q  170 ttactgatgtaataaaaccaggccatacgccaac 203  Q
    |||||||||||||||||||||||||| |||||||    
T  5197529 ttactgatgtaataaaaccaggccatgcgccaac 5197496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 71 - 203
Target Start/End: Complemental strand, 5184229 - 5184097
Alignment:
Q  71 tacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaact 170  Q
    |||| ||||||||||||| |||||||| |||||||||||||||| |||||||||| || |||||| |||||||||| |||||| ||||||||||||||||    
T  5184229 tacagtatccaaatattttagactccacataaagtttcaacaggaactatggacactcatcaatataatggaaaagatggaaagaatctacgcataaact 5184130  T
Q  171 tactgatgtaataaaaccaggccatacgccaac 203  Q
    |||||||||||||||||||||||||||||||||    
T  5184129 tactgatgtaataaaaccaggccatacgccaac 5184097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 5174882 - 5174755
Alignment:
Q  70 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 169  Q
    |||||||||||||||||||||||||||| ||||||||| |||      |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5174882 ttacaatatccaaatatttgagactccacataaagtttaaac------tatggacactcttcaatacaatggaaaagttggaaaaaatctacgcataaac 5174789  T
Q  170 ttactgatgtaataaaaccaggccatacgccaac 203  Q
    |||||||| |||||||||||||||||||||||||    
T  5174788 ttactgatataataaaaccaggccatacgccaac 5174755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 4840640 - 4840767
Alignment:
Q  70 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 169  Q
    ||||||||||||||||||| |||||||| ||||||||| |||      |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  4840640 ttacaatatccaaatattttagactccacataaagtttaaac------tatggacactctttaatacaatggaaaagttggaaaaaatctacgcataaac 4840733  T
Q  170 ttactgatgtaataaaaccaggccatacgccaac 203  Q
    ||||||||||||||||||||||||||||||||||    
T  4840734 ttactgatgtaataaaaccaggccatacgccaac 4840767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 4855142 - 4855275
Alignment:
Q  70 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 169  Q
    |||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||  |||  | ||||    
T  4855142 ttacaatacccaaatatttgagactccacataaagtttcaacaggtactacggacactctttaatacaatggaaaagttggaaaaaagatacctacaaac 4855241  T
Q  170 ttactgatgtaataaaaccaggccatacgccaac 203  Q
    ||||| ||||||||||||||||||| ||||||||    
T  4855242 ttactaatgtaataaaaccaggccaaacgccaac 4855275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 5215774 - 5215641
Alignment:
Q  70 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 169  Q
    ||||||||||||||||||||||||| ||  | ||||||||||||| |  |  |||| |||||||||||||||||| |||||||||| | |||||||||||    
T  5215774 ttacaatatccaaatatttgagacttcacttgaagtttcaacaggaataacagacactcttcaatacaatggaaacgttggaaaaattttacgcataaac 5215675  T
Q  170 ttactgatgtaataaaaccaggccatacgccaac 203  Q
    ||||||||||||||||||||||||||||||||||    
T  5215674 ttactgatgtaataaaaccaggccatacgccaac 5215641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 70 - 203
Target Start/End: Complemental strand, 5161949 - 5161816
Alignment:
Q  70 ttacaatatccaaatatttgagactccaaataaagtttcaacaggtactatggacattcttcaatacaatggaaaagttggaaaaaatctacgcataaac 169  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||| | ||| |||||| |||||||||||||||||||||||    ||   ||||    
T  5161949 ttacaatatccaaatatttgagactccacgtaaagtttcaacaggtactacgtacactcttcagtacaatggaaaagttggaaaaaaaaatcgtgcaaac 5161850  T
Q  170 ttactgatgtaataaaaccaggccatacgccaac 203  Q
    ||||| |||||||||||||| |||||||||||||    
T  5161849 ttactaatgtaataaaaccaagccatacgccaac 5161816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University