View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_7 (Length: 546)
Name: NF8906_low_7
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 16 - 531
Target Start/End: Complemental strand, 28238740 - 28238227
Alignment:
| Q |
16 |
tgtgtcctgcactcagtttcataaaaaatgcaaaggaagtataaaccattgttagcaaccnnnnnnntcggatagagaaaatcggacatgcagttcaatc |
115 |
Q |
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| T |
28238740 |
tgtgtcctgcactcagtttcataaaaaatgcaaaggaagtataaaccattgttagcaaccaaaaaaatcggatagagaaaatcggacatgcagttcaatc |
28238641 |
T |
|
| Q |
116 |
tagttttacgcttatgtctaatgagaatcgagtattttgcaacattaccccacttttgtaactaaattttgaaactagttgtatgacatggtaaaaagga |
215 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28238640 |
tagttttacgcttatgtctaatgagaatcaagtattttgcaacattaccccacttttgtaactaaattttgaaactagttgtatgacatggtaaaaagga |
28238541 |
T |
|
| Q |
216 |
ggactctcgttatatgctagcgtaaaactaatttacaccgacgttgtatatgcattaaactcaactagatatgcttgtttttacttcttaagcaagaaat |
315 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28238540 |
ggactctcgttatatgctagcataaaactaatttacac-gacattgtatatgcattaaactcaactagatatgcttgtttttacttcttaagcaagaaat |
28238442 |
T |
|
| Q |
316 |
acaatcttgtgtgtgtggataaaacaaattggggatttgaaaagtagggaatgaatatcaaggaagtattaaatatttggattccgtgcagttaggaaaa |
415 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28238441 |
acaatcttgtgtgt-tggataaaacaaattggggatttgaaaagtagggaatgaatatcaaggaagtattaaatatttggattccgtgcagttaggaaaa |
28238343 |
T |
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| Q |
416 |
tcacgcattcactcagtcgtaagtcagaacgaatggacttggattcatgtagtcatgcagtcggtgcattagaggtcgtctgaatgaaatccgacggtca |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
28238342 |
tcacgcattcactcagtcgtaagtcagaacgaatggacttggattcatgtagtcatgcagtcggtgcattagaggtcgtatgaatgaaatccgacggtca |
28238243 |
T |
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| Q |
516 |
atatttgaagcttagt |
531 |
Q |
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|||||||||||||||| |
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| T |
28238242 |
atatttgaagcttagt |
28238227 |
T |
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