View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_8 (Length: 498)
Name: NF8906_low_8
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 29880012 - 29879758
Alignment:
| Q |
1 |
agaacaatgattccgaccttcatatttttcataaaagaaattnnnnnnngggtgtatgggaataaatgtttattataagttttgatatttttaggtaact |
100 |
Q |
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| T |
29880012 |
agaacaatgattctgaccttcatatttttcataaaagaaattaaaaaaagggtgtatgggaataaatgtttattataagttttgatatttttaggtaact |
29879913 |
T |
|
| Q |
101 |
ttcatgtcaacgtataattaaattgaatattaattataacatgcgatatattcaatggtacataggaagcccctacatacccaaaagtgctaggataaaa |
200 |
Q |
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| T |
29879912 |
ttcatgtcaacgtataattaaattgaatattaattataacatgcgatatattcaatggtacataggaagcccctacatacccaaaagtgctaggataaaa |
29879813 |
T |
|
| Q |
201 |
tatgattggaagactcttttaattaaatcatgggatcgagtttgaatttaattta |
255 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29879812 |
tatgattggaatactcttttaattaaatcatgggatcgagtttgaatttaattta |
29879758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 327 - 480
Target Start/End: Complemental strand, 29879632 - 29879481
Alignment:
| Q |
327 |
tggggactcataaataataaggccagtatcaaaaacaagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgt |
426 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29879632 |
tggggactcataaataataaggccagtatcaaaag-aagctccgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaa-ccgt |
29879535 |
T |
|
| Q |
427 |
aacagtactttgaagaagcaaatcttttatgtcttggataagaactgcataaac |
480 |
Q |
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| T |
29879534 |
aacagtactttgaagaagcaaatcttttatgtcttggataaaaactgcataaac |
29879481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 331 - 467
Target Start/End: Original strand, 38065660 - 38065795
Alignment:
| Q |
331 |
gactcataaataataaggccagtatcaaaaacaagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaaca |
430 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||| ||| ||||||| |||||||| |||||| | | |||||||||||||||||| |||||||||| | |
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| T |
38065660 |
gactcataaataacaaggccaacatcaaaag-aagattcaagctttgtaaggaaattcgcacaataggtcccttatctgagagtgtgccaaaccgtaaaa |
38065758 |
T |
|
| Q |
431 |
gtactttgaagaagcaaatcttttatgtcttggataa |
467 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||| |
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| T |
38065759 |
gtactttgaagaagtaaatcttttatgtcttggataa |
38065795 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 363 - 468
Target Start/End: Original strand, 25121080 - 25121184
Alignment:
| Q |
363 |
aagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttg |
462 |
Q |
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||||| ||||||||| |||||||||| || ||||||||| || ||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25121080 |
aagctccgagctttgtaaggaaatccacatattggttcc-ttctctgagagtgtgaccaaccgtaacagtactttgaagaaacaaatcttttatgtcttg |
25121178 |
T |
|
| Q |
463 |
gataag |
468 |
Q |
| |
|
|||||| |
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|
| T |
25121179 |
gataag |
25121184 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 363 - 467
Target Start/End: Complemental strand, 22192190 - 22192086
Alignment:
| Q |
363 |
aagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttg |
462 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||| || ||||||||||| |||||| |||||| |||||||| ||||||||||||| ||||| || |
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| T |
22192190 |
aagcttcgagcttggcaagaaaatccgcacattggttccattctctgagagtgtgacaaactgtaacaatactttgatgaagcaaatctttcatgtcatg |
22192091 |
T |
|
| Q |
463 |
gataa |
467 |
Q |
| |
|
||||| |
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|
| T |
22192090 |
gataa |
22192086 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 363 - 468
Target Start/End: Original strand, 37190293 - 37190397
Alignment:
| Q |
363 |
aagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttg |
462 |
Q |
| |
|
||||| ||||||||||||| |||||| | ||| |||| || ||||||||||| |||||| ||||||||||||| ||||||||||| |||||||||||| |
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| T |
37190293 |
aagctccgagctttgcaagaaaatccatatattacttccgttctctgagagtgtgacaaactgtaacagtactttaaagaagcaaat-ttttatgtcttg |
37190391 |
T |
|
| Q |
463 |
gataag |
468 |
Q |
| |
|
|||||| |
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|
| T |
37190392 |
gataag |
37190397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 331 - 448
Target Start/End: Complemental strand, 26554227 - 26554111
Alignment:
| Q |
331 |
gactcataaataataaggccagtatcaaaaacaagcttcgagctttgcaaggaaatccgcacattggttcccttatctgagagtgttacaaaccgtaaca |
430 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||| |||||||| ||||||||| ||| |||| ||||||| ||||||| ||| |||||| |||| | |
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| T |
26554227 |
gactcataaataataaggccatcatcagaag-aagctctgagctttggaaggaaatctgcatattgattcccttctctgagaatgtgacaaactgtaaaa |
26554129 |
T |
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| Q |
431 |
gtactttgaagaagcaaa |
448 |
Q |
| |
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|||||||||||||||||| |
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|
| T |
26554128 |
gtactttgaagaagcaaa |
26554111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 471
Target Start/End: Original strand, 31010086 - 31010174
Alignment:
| Q |
383 |
aaatccgcacattggttcccttatctgagagtgttacaaaccgtaacagtactttgaagaagcaaatcttttatgtcttggataagaac |
471 |
Q |
| |
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||||| ||| |||| ||||||| ||||||||| | |||||| | ||| |||||||| |||| | |||||||||||||| |||||||| |
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| T |
31010086 |
aaatcagcatattgattcccttctctgagagtatcacaaacaatgacattactttgatgaagaagctcttttatgtcttgtataagaac |
31010174 |
T |
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