View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8906_low_9 (Length: 497)
Name: NF8906_low_9
Description: NF8906
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8906_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 4 - 480
Target Start/End: Original strand, 23692461 - 23692937
Alignment:
| Q |
4 |
tgatcaacaattgttatcaacacactactaataaaatttgcagctccaatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaactt |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23692461 |
tgatcaacaattgttatcaacacactactaataaaatttgcagctccaatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaactt |
23692560 |
T |
|
| Q |
104 |
ggtcatagaaatattcttgtaatcccacaagggtaaatccatcaccaaaaccaataattagaaattgtggagccaaccaaaaaatacttaatggatcctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23692561 |
ggtcatagaaatattcttgtaatcccacaagggtaaatccatcaccaaaaccaataattagaaattgtggagccaaccaaaaaatacttaatggatcctt |
23692660 |
T |
|
| Q |
204 |
ttcaacatcttcaagtctctttttctctattaaagctgctactatcattgtaataatagtgaaaaacattccaaaaccaatcctttgaaggatgttaatt |
303 |
Q |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23692661 |
ttcaacagcttcaagtctctttttctctattaaagctgccactatcattgtaataatagtgaaaaacattccaaaaccaatcctttgaaggatgttaatt |
23692760 |
T |
|
| Q |
304 |
cctctttcattttgatttatttttcttaacataggtactagaatcttgtcataaatggccacagaaattatcattcctaaggcagcaactgtgaaaattg |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23692761 |
cctctttcattttgatttatttttcttaacataggtactagaatcttgtcataaatggccacagaaattatcattcctaaggcagcaactgtgaaaattg |
23692860 |
T |
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| Q |
404 |
aagctggtggaagttcaaacctttcacctatttttctgttcattatagcactttgtttaatgaagaatgttgatgtt |
480 |
Q |
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| T |
23692861 |
aagctggtggaagttcaaacctttcacctatctttctattcattatagcactttgtttgatgaagaatgttgatgtt |
23692937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 4 - 480
Target Start/End: Original strand, 6145638 - 6146132
Alignment:
| Q |
4 |
tgatcaacaattgttatcaacacactactaataaaatttgcagctccaatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaactt |
103 |
Q |
| |
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|||||||||||||||||||||| |||||| | |||||||||||||||||||||||| | |||| | || || ||||||||||||||||||||||||| |
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| T |
6145638 |
tgatcaacaattgttatcaacaaactacttagaaaatttgcagctccaatcacactaaggtaaagtccaattcccaagcttctcattgaatcaggaactt |
6145737 |
T |
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| Q |
104 |
ggtcatagaaatattcttgtaatcccacaagggtaaatccatcaccaaaaccaataattagaaattgtggagccaaccaaaaaatact------------ |
191 |
Q |
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| T |
6145738 |
gatcatagaaatattcttgtaaaccaacaagcgccaaaccgtcgccaaaaccgataattagaaactgcggcgctaaccaaaaaacactcattgaaagtga |
6145837 |
T |
|
| Q |
192 |
------taatggatccttttcaacatcttcaagtctctttttctctattaaagctgctactatcattgtaataatagtgaaaaacattccaaaaccaatc |
285 |
Q |
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| T |
6145838 |
accatgtgatggattcatctcaacaactttaagcctttttttctcgaccaaagctgctactatcattgttaaaaccgaaaaaaccattccaataccaatc |
6145937 |
T |
|
| Q |
286 |
ctttgaaggatgttaattcctctttcattttgatttatttttcttaacataggtactagaatcttgtcataaatggccacagaaattatcattcctaagg |
385 |
Q |
| |
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|||||||| ||||| || ||||||||||| | ||||||||||||| | || || || || ||||| ||||| || |||||||||||||| || | | |
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| T |
6145938 |
ctttgaagaatgttcatccctctttcattgccacttatttttcttaaaactggcacgaggattttgtcgtaaattgcgacagaaattatcataccaatag |
6146037 |
T |
|
| Q |
386 |
cagcaactgtgaaaattgaagctggtggaagttcaaacctttcacctatttttctgttcattatagcactttgtttaatgaagaatgttgatgtt |
480 |
Q |
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| | || |||||||||||||| ||||||| || || | | ||||||||||| ||||||||| || ||| || || ||||| ||||||||| |
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| T |
6146038 |
cggaaatagtgaaaattgaagcgggtggaatctcgaaaccatgtcctatttttctattcattatattaccttgcttgataaagaaagttgatgtt |
6146132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 31063437 - 31063547
Alignment:
| Q |
47 |
ctccaatcacacttaaataaaaagctatacctaagcttctcattgaatcaggaacttggtcatagaaatattcttgtaatcccacaagggtaaatccatc |
146 |
Q |
| |
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||||||||||||| | ||| || || || ||||||||||||||||| |||||||||||||| |||||||| |||||||| || ||||||| |||| ||| |
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| T |
31063437 |
ctccaatcacactaagatataatgccattcctaagcttctcattgagtcaggaacttggtcgtagaaatactcttgtaaaccaacaagggaaaatgaatc |
31063536 |
T |
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| Q |
147 |
accaaaaccaa |
157 |
Q |
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| T |
31063537 |
accgaaaccaa |
31063547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 31057387 - 31057432
Alignment:
| Q |
79 |
aagcttctcattgaatcaggaacttggtcatagaaatattcttgta |
124 |
Q |
| |
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||||||||||||||||||||||||| ||| |||||||| ||||||| |
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| T |
31057387 |
aagcttctcattgaatcaggaacttcgtcgtagaaatactcttgta |
31057432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 31074886 - 31074951
Alignment:
| Q |
86 |
tcattgaatcaggaacttggtcatagaaatattcttgtaatcccacaagggtaaatccatcaccaa |
151 |
Q |
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||||||| |||||||||||| |||||||||| |||||||| || ||||| | |||| |||||||| |
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| T |
31074886 |
tcattgagtcaggaacttggccatagaaatactcttgtaaaccaacaagagaaaatgaatcaccaa |
31074951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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