View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8907_high_3 (Length: 643)

Name: NF8907_high_3
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8907_high_3
NF8907_high_3
[»] chr2 (12 HSPs)
chr2 (66-415)||(17613628-17613976)
chr2 (66-415)||(17693361-17693694)
chr2 (503-625)||(17693849-17693971)
chr2 (503-625)||(17614130-17614252)
chr2 (66-181)||(17671209-17671324)
chr2 (207-302)||(17671327-17671422)
chr2 (312-415)||(17671476-17671579)
chr2 (207-302)||(17657819-17657914)
chr2 (123-181)||(17657758-17657816)
chr2 (32-61)||(17613540-17613569)
chr2 (32-61)||(17626725-17626754)
chr2 (32-61)||(17671121-17671150)


Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-119; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 66 - 415
Target Start/End: Original strand, 17613628 - 17613976
Alignment:
Q  66 gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatatctatgtatgtactacttgagga 165  Q
    ||||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  17613628 gatgatggtgtctttacgccttaatttcagtgctaacggacatatatcacgcagaacctagtgtacagggattgatatctatgtatgtac--cttgagga 17613725  T
Q  166 aaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcact 265  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||     
T  17613726 aagattcacttgttgtgatatatattttgaagccatgttgaatgtttgtaaattagaagatgcccaggttggccaattagaagaaaaatgtgtcatcac- 17613824  T
Q  266 ttgtggcaacttcttaccc-tttttcctcaattctctc-nnnnnnnnnaaccccttttgttatgcctcgtcttcaagttcctcttgtacttccaacataa 363  Q
    |||||||||||||| |||| ||||||||||||||||||          |||||||||||||||||||  |||||||| |||| ||||||||||| |||||    
T  17613825 ttgtggcaacttctgacccttttttcctcaattctctctcttttttttaaccccttttgttatgccttctcttcaagctcctattgtacttccatcataa 17613924  T
Q  364 cagcaaataactttttactgtcatgaatttagatgaagttcaagttgttgtg 415  Q
     |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  17613925 tagcaaataactttttactgctatcaatttagatgaagttcaagttgttgtg 17613976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 66 - 415
Target Start/End: Original strand, 17693361 - 17693694
Alignment:
Q  66 gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatatctatgtatgtactacttgagga 165  Q
    ||||| |||||||||| |||||||||||| ||||||| | | | ||||||||||||| |||||||||||| ||||||||||| |||||||  ||||||||    
T  17693361 gatgatggtgtctttatgccttaatttcagtgctaacgggcgtctatcatgcagaacttagtgtacagggtttgatatctat-tatgtac--cttgagga 17693457  T
Q  166 aaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcact 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  17693458 aaggttcacttgttgtgatatatattgtgaagccatgttgaatgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcac- 17693556  T
Q  266 ttgtggcaacttcttaccctttttcctcaattctctcnnnnnnnnnaaccccttttgttatgcctcgtcttcaagttcctcttgtacttccaacataaca 365  Q
    |||||||||||||  |||||||||||||||||||||          |||| |||||||||||||| |||||||||            |||||||||||||    
T  17693557 ttgtggcaacttcagaccctttttcctcaattctcttgttttttttaaccacttttgttatgccttgtcttcaag------------ttccaacataaca 17693644  T
Q  366 gcaaataactttttactgtcatgaatttagatgaagttcaagttgttgtg 415  Q
    ||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  17693645 gcaaacaactttttactgccatgaatttatatgaagttcaagttgttgtg 17693694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 503 - 625
Target Start/End: Original strand, 17693849 - 17693971
Alignment:
Q  503 ttggtattaagcagctttgatgcaatcaaaacaaatatattggaggcatcaatttataacgactatatacttgtaatgttgctcattggtattaactgga 602  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||  |||| ||||||||||||||||||||||||||||||| ||    
T  17693849 ttggtattaagtagctttgatgcaatcaaaacaaataaattggaggcataaatttataagaactagatacttgtaatgttgctcattggtattaactaga 17693948  T
Q  603 tactaacttgagtgctgctaact 625  Q
    |||||||  ||||||||||||||    
T  17693949 tactaacccgagtgctgctaact 17693971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 503 - 625
Target Start/End: Original strand, 17614130 - 17614252
Alignment:
Q  503 ttggtattaagcagctttgatgcaatcaaaacaaatatattggaggcatcaatttataacgactatatacttgtaatgttgctcattggtattaactgga 602  Q
    |||| |||||| ||||||||||||||||||| ||| | ||||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  17614130 ttggcattaagtagctttgatgcaatcaaaaaaaaaaaattggaggcataaatttataaggactagatacttgtaatgttgctcattggtattaactaga 17614229  T
Q  603 tactaacttgagtgctgctaact 625  Q
    ||||||| |||||||||||||||    
T  17614230 tactaacctgagtgctgctaact 17614252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 66 - 181
Target Start/End: Original strand, 17671209 - 17671324
Alignment:
Q  66 gatgacggtgtctttacgccttaatttcattgctaacagacatatatcatgcagaacctagtgtacagggattgatatctatgtatgtactacttgagga 165  Q
    ||||| ||||||||| ||||||| ||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  17671209 gatgatggtgtcttttcgccttagtttcagtgctaacggacatctatcatgcagaacctagtgtacagggattgatatctatgtatgtaccacttgatga 17671308  T
Q  166 aaggttcacttgttgt 181  Q
    | ||||||||||||||    
T  17671309 atggttcacttgttgt 17671324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 17671327 - 17671422
Alignment:
Q  207 atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcactttgtggcaacttcttaccc-tttttcctcaattctctc 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| |||| ||||||||||||||||||    
T  17671327 atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgtcatcac-ttgtggcaacttctgacccttttttcctcaattctctc 17671422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 312 - 415
Target Start/End: Original strand, 17671476 - 17671579
Alignment:
Q  312 aaccccttttgttatgcctcgtcttcaagttcctcttgtacttccaacataacagcaaataactttttactgtcatgaatttagatgaagttcaagttgt 411  Q
    ||||||||||||||||||| |||| |||| |||| ||||||||||| ||||| |||||||||||||||||||  || |||||||||||||||||||||||    
T  17671476 aaccccttttgttatgccttgtctccaagctcctattgtacttccatcataatagcaaataactttttactgctatcaatttagatgaagttcaagttgt 17671575  T
Q  412 tgtg 415  Q
    ||||    
T  17671576 tgtg 17671579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 17657819 - 17657914
Alignment:
Q  207 atgtttgtaaattagaagatgcccaggttggcaaattagaagaaaaatgtgccatcactttgtggcaacttcttaccct-ttttcctcaattctctc 302  Q
    |||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||| |||||||||||||||||    
T  17657819 atgtttgtaaattagaagatgctcaggtttgcaaattagaagaaaaatgtgtcatcac-ttgtggcaacttctgaccctattttcctcaattctctc 17657914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Original strand, 17657758 - 17657816
Alignment:
Q  123 ctagtgtacagggattgatatctatgtatgtactacttgaggaaaggttcacttgttgt 181  Q
    |||||||||||| |||||||||||||||||||| |||||| ||| ||||||||||||||    
T  17657758 ctagtgtacaggaattgatatctatgtatgtaccacttgatgaatggttcacttgttgt 17657816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 17613540 - 17613569
Alignment:
Q  32 tatggtgcttgtgaagagtgacctaacctt 61  Q
    ||||||||||||||||||||||||||||||    
T  17613540 tatggtgcttgtgaagagtgacctaacctt 17613569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 17626725 - 17626754
Alignment:
Q  32 tatggtgcttgtgaagagtgacctaacctt 61  Q
    ||||||||||||||||||||||||||||||    
T  17626725 tatggtgcttgtgaagagtgacctaacctt 17626754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 61
Target Start/End: Original strand, 17671121 - 17671150
Alignment:
Q  32 tatggtgcttgtgaagagtgacctaacctt 61  Q
    ||||||||||||||||||||||||||||||    
T  17671121 tatggtgcttgtgaagagtgacctaacctt 17671150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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