View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_high_5 (Length: 488)
Name: NF8907_high_5
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_high_5 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 15 - 488
Target Start/End: Original strand, 34819671 - 34820144
Alignment:
| Q |
15 |
cacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
34819671 |
cacagagcgcaaacaagaaacactagcatcatgaaacatattggagtgattagacttccttgttgcctcaaaatcttcataaaggttgaaatgatccttc |
34819770 |
T |
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| Q |
115 |
acgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgaccttcttcttgttggcctcgccttcataac |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |
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| T |
34819771 |
acgaagccagcacgatcgaagttcctgttccacaaggagccgccgatctcaacctcaagaacgcactcgacattcttcttgttggcctcgcctttatcac |
34819870 |
T |
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| Q |
215 |
tcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatact |
314 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||| |
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| T |
34819871 |
tcttccctttcttctttaaaggacatgcctcaacgagttgatggtcaatcttagcttgcaaaaccaccgcatacgtaccatcatcatttttggtgatact |
34819970 |
T |
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| Q |
315 |
ctcgtcaataaaacttccagcaaagatttctgattcagacttagatcttcttattgcttttgcactaaacacatttattctcgttcctttatgttcttgg |
414 |
Q |
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|||||||| |||||| ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
34819971 |
ctcgtcaacaaaactcccagccaagatttctgattcagacttggatcttctaattgcttttgcactaaacacatttagtctcattcctttatgttcttgg |
34820070 |
T |
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| Q |
415 |
cagctaactcttttctcaactggtggctttgtacaaatactatcatcattcttcttgtttgtctcgcctttatc |
488 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
34820071 |
cagctaactcttttctcagctggtggctttgtacaaatactaccatcattcttcttggttgtctcgcctttatc |
34820144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 34820119 - 34820261
Alignment:
| Q |
187 |
ttcttcttgttggcctcgccttcataactcttccctttcttctttaaaggacatgcctcagcgagttgatggtcaatcttagcttgcaaaaccacctcat |
286 |
Q |
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||||||||| | | |||||||| || ||||||||||||||||||||||||| | |||||||||||||||||||||| || ||||| |||| ||||| |
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| T |
34820119 |
ttcttcttggttgtctcgcctttatcactcttccctttcttctttaaaggagacgcctcagcgagttgatggtcaacctcagcttccaaagtcacctatg |
34820218 |
T |
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| Q |
287 |
acataccaacatcatttttggtgatactctcgtcaataaaact |
329 |
Q |
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|| ||||||||| |||||| ||||| |||||||||| |||||| |
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| T |
34820219 |
acgtaccaacattattttttgtgatgctctcgtcaacaaaact |
34820261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 34820530 - 34820612
Alignment:
| Q |
247 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
329 |
Q |
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||||| |||||||||| || | ||| |||||||||||| ||||||| |||||| |||| |||||||| ||||||| |||||| |
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| T |
34820530 |
gcgagctgatggtcaagctcaacttccaaaaccacctccgacataccgacatcaattttagtgatactttcgtcaacaaaact |
34820612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 247 - 328
Target Start/End: Original strand, 34820296 - 34820377
Alignment:
| Q |
247 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaac |
328 |
Q |
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|||||||||||||||| | | ||| |||| ||||||| || |||||| ||||||||| |||||||||||||||| ||||| |
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| T |
34820296 |
gcgagttgatggtcaaccacaacttccaaagccacctctgacgtaccaaaatcattttttgtgatactctcgtcaacaaaac |
34820377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 34820653 - 34820729
Alignment:
| Q |
253 |
tgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
329 |
Q |
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||||||| || || ||||| |||| ||||||| || |||||| ||||||||| |||||||||||||||| |||||| |
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| T |
34820653 |
tgatggttaacctcagcttccaaagccacctctgacgtaccaatatcattttttgtgatactctcgtcaacaaaact |
34820729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 453
Target Start/End: Original strand, 34835101 - 34835165
Alignment:
| Q |
389 |
ttattctcgttcctttatgttcttggcagctaactcttttctcaactggtggctttgtacaaata |
453 |
Q |
| |
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|||||||| ||||||||||||| || || |||||||||||||| || || | ||||||||||||| |
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| T |
34835101 |
ttattctcattcctttatgttcatgacacctaactcttttctcgaccggcgtctttgtacaaata |
34835165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 34820807 - 34820846
Alignment:
| Q |
290 |
taccaacatcatttttggtgatactctcgtcaataaaact |
329 |
Q |
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|||||||||||||||| |||||||||||||||| |||||| |
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| T |
34820807 |
taccaacatcattttttgtgatactctcgtcaacaaaact |
34820846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 34820413 - 34820495
Alignment:
| Q |
247 |
gcgagttgatggtcaatcttagcttgcaaaaccacctcatacataccaacatcatttttggtgatactctcgtcaataaaact |
329 |
Q |
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||||| |||||||||| || | ||| |||||||||||| | |||||||||||||||| ||| ||||||||||| |||||| |
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| T |
34820413 |
gcgagctgatggtcaacctcaactttcaaaaccacctctgatgtaccaacatcattttttatgacactctcgtcaacaaaact |
34820495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 22080680 - 22080743
Alignment:
| Q |
61 |
tgattagacttccttgttacgtcaaaatcttcataaaggttgaaatgatccttcacgaagccag |
124 |
Q |
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|||||||||||||| | | | |||||||| ||| ||||||||||||||| ||||||||||||| |
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| T |
22080680 |
tgattagacttcctcgctgcctcaaaatcctcaggaaggttgaaatgatctttcacgaagccag |
22080743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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