View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_10 (Length: 534)
Name: NF8907_low_10
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 10991889 - 10991604
Alignment:
| Q |
16 |
acatcaattacaagcaactcagagtaacttaaagcatcataatgtcaaggagcaaatactactgtatctcaaatatgtttttatgagaaaggatgcatca |
115 |
Q |
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| T |
10991889 |
acatcaattacaagcaactcagagtaacttaaagcatcataatgtcaaggagcaaatactactgtatctcaaatatgtttttatgagaaaggatgcatca |
10991790 |
T |
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| Q |
116 |
aagcctaggatattgcatgcacaaaatcaaattggtagaagagtttaaattggttgttcaatccaaaaggagactcaatccaacaatgaatgaggtagtt |
215 |
Q |
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| T |
10991789 |
aagcctaggatattgcatgcacaaaatcaaattggtaggagagtttaaattggttgttcaatccaaaaggagactcaatccaacaatgaatgaggtagtt |
10991690 |
T |
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| Q |
216 |
aaaaaaggaagtgctgaaacttttagatggcggaatgatatatcgtattctaatagcttgtgggttagtccagttcaagtggtacc |
301 |
Q |
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| T |
10991689 |
aaaaaaggaagtgctgaaacttttagatggcgaaatgatatatcgtattctaatagcttgtgggttagaccagttcaagtggtacc |
10991604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 313 - 518
Target Start/End: Complemental strand, 10991332 - 10991127
Alignment:
| Q |
313 |
gaatgtcctttagattgtgcaatgcagtaacaatgtttcaaagatgaattctttcaaatattctcatacttgatttagaagaacattgaattctcgatgg |
412 |
Q |
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| T |
10991332 |
gaatgtcctttagattgtgcaatgcactaacaatgttttaaagatgaattctttcaaatattctcatgcttgatttagaagaacattgaattctcgatgg |
10991233 |
T |
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| Q |
413 |
atgatttttagatgtttggaaaatattttgatagctgcctcaaagacgtatatgatgtattgaaagagatctgtaaaaacaaatttgatgttgaatccga |
512 |
Q |
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| T |
10991232 |
atgatttttagacgtttggaaaatattttgatagctgcctcaaagacgtatatgatgtattgaaagagatgtgtaaaaacaaatttgatgttgaatccga |
10991133 |
T |
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| Q |
513 |
aaaaat |
518 |
Q |
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|||||| |
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| T |
10991132 |
aaaaat |
10991127 |
T |
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