View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_13 (Length: 395)
Name: NF8907_low_13
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_13 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 25819742 - 25820136
Alignment:
| Q |
1 |
ctcttaaggaaagattatgttgtcttagttaagacaaaaacacttaacatatttaacggacaaagctctcatgcatataaaagtcttgagaatgccaagt |
100 |
Q |
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||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||| |||||||||| |
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| T |
25819742 |
ctcttaatgaaagattatgctgtcttagttaagacaaaaacacttaacatattttacggacaaagctctcaagcatacaaaagtcttgaaaatgccaagt |
25819841 |
T |
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| Q |
101 |
gatgctcttttaagggccacatgttacagattataaaaaattattttgatatcaataattcaaagattaattttaagagtatgaatgtttgaatgatttt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25819842 |
gatgctcttttaagggccacatgttacagattataaaaaattattttaatatcaataattcaaagattaattttaagagtatgaatgtttgaatgatttt |
25819941 |
T |
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| Q |
201 |
gaattcaatcttaaaactgtggcaacattattgtaaactcttgaagttgaacattaccgtctatagggtcatatttgactcgagaagttagttgcaacag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
25819942 |
gaattcaatcttaaaactgtggcaacattattgtaaactcttgaagttgaacgttaccgtctatatggtcatatttgactcgagaaattagttgcaacag |
25820041 |
T |
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| Q |
301 |
ttgtgtacgaaaatacctgaattcacatnnnnnnnnnnnnnnnnnnnnnncaccaaagtctctagtataaatattacaagtaatatgattaaata |
395 |
Q |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25820042 |
ttgtgtacgaaaatacctgatttcacataaaaaaaattgaatgaaaaaaacaccaaagtctctagtataaatattacaagtaatatgattaaata |
25820136 |
T |
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