View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_16 (Length: 366)
Name: NF8907_low_16
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 52712380 - 52712030
Alignment:
| Q |
19 |
acaatcgagggcatttcaatgtgcaacctgcagtgattatttatttgaagtttaaaaaatctttaatattattattattcatgatccaacgttataa--- |
115 |
Q |
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| T |
52712380 |
acaatcgagggcatttcaatgtgcaacctgcagtgatt---tatttgaagtttaaaaaatctttaatattattatt---catgatccaacgttataattg |
52712287 |
T |
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| Q |
116 |
----------------aagatagaagattttaatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatga |
199 |
Q |
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| T |
52712286 |
attgataaagacaaaaaagatagaagatttttatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatga |
52712187 |
T |
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| Q |
200 |
gttttctcccgaccatgacgaggatgagttttgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccacctt |
299 |
Q |
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| T |
52712186 |
gttttctccaaaccatgaagaggatgagttttgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccacctt |
52712087 |
T |
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| Q |
300 |
cttctggctaatatatggagactttgtttcttcctcaatttcaaactctctttctct |
356 |
Q |
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| T |
52712086 |
cttctggctaatatatggagactttgtttcttcctcaatttcaaagtctctttctct |
52712030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 131 - 356
Target Start/End: Complemental strand, 52717852 - 52717627
Alignment:
| Q |
131 |
aatacccaaatgatataagagaccaaacaagtccgataagacttgcgtatgtgttaggatttctgatgagttttctcccgaccatgacgaggatgagttt |
230 |
Q |
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| T |
52717852 |
aatacctaaatgatacaagagaccaaacaagtcctataagacttgagtaggtattaggatttctgatgagttttctccaaaccatgatgaggattagtct |
52717753 |
T |
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| Q |
231 |
tgtcatcacacttgctggtggcatctgtttgtttttgtttacatccccaactccttccaagtccaccttcttctggctaatatatggagactttgtttct |
330 |
Q |
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| T |
52717752 |
tgtcatgacacttgctggtggcatctgtgtatttttgcttacatcccctcctccttccaagtccatcttcttctggctaatatatggagactttactgct |
52717653 |
T |
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| Q |
331 |
tcctcaatttcaaactctctttctct |
356 |
Q |
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||||||||||||| || |||||||| |
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| T |
52717652 |
tcctcaatttcaacatccctttctct |
52717627 |
T |
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