View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_18 (Length: 350)
Name: NF8907_low_18
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 33332752 - 33333076
Alignment:
| Q |
1 |
aaagtacaaattgaggaagggaacattttgcacgtgagaggtgaaggtgtgaaagaggagaatttgggaaaggacattgtttggcatgcagctgagagag |
100 |
Q |
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| T |
33332752 |
aaagtacaaattgaggaagggaacattttgcacgtgagaggtgaaggtgtgaaagaggagaatttaggaaaggacattgtttggcatgcagctgagagag |
33332851 |
T |
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| Q |
101 |
gaactggaaaaagagatttttcaaggatgattgaattgcctgagaatgtgaaattggatcagattaaggcacatgtggaaaatggagttcttaccattct |
200 |
Q |
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| T |
33332852 |
ggattggaaaaagagatttttcaaggatgattgaattgcctgagaatgtgaaattggatcagattaaggcacatgtggaaaatggagttctcaccgttct |
33332951 |
T |
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| Q |
201 |
tgtacctaaagatgcatcacctaaatcgcataaagttcgaaacattaacataactagtaaactttaagatttgaaaaattataaatgtgttgataggaat |
300 |
Q |
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| T |
33332952 |
tgtacctaaagatgcatcacctaaatcacataaagttcgaaacattaacatcactagtaaactttaagatttgcaaaattata--------gataggaat |
33333043 |
T |
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| Q |
301 |
aaaaatgaagagaaaattatggaaaatagatgt |
333 |
Q |
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| T |
33333044 |
aaaaatggagagaaaattatggaaaatagatgt |
33333076 |
T |
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