View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8907_low_19 (Length: 317)
Name: NF8907_low_19
Description: NF8907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8907_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 24907732 - 24908020
Alignment:
| Q |
17 |
acatcatataccagaaatatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtag |
116 |
Q |
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| T |
24907732 |
acatcatataccagaaacatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtag |
24907831 |
T |
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| Q |
117 |
aggtttgacatcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24907832 |
aggtttgacatcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatct |
24907931 |
T |
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| Q |
217 |
gtatattccaggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgct |
305 |
Q |
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| T |
24907932 |
gtatattccaggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaacttgtttcatggttggtctgtgct |
24908020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 24890031 - 24890303
Alignment:
| Q |
17 |
acatcatataccagaaatatggaaccaacatcatttgtaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtag |
116 |
Q |
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|||||| |||||| || |||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24890031 |
acatcacataccaaaagtatgaacccaacatcatttgcaaatagtaaccatcatctaggaaacatctctgtcacaatatctgtaccgctaaattgcgtag |
24890130 |
T |
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| Q |
117 |
aggtttgacatcgattttcatattttttgtgcttgattacttgagatgacgatgaaatctcattcaaagaaccactcgtctttgcggaagcattccatct |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| || | |
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| T |
24890131 |
aggtttgatgtcgattttcatattttttgtgcttgattacttgagatgacgatgacatctcattcaaagaaccactcgtctttgcggaggcattctattt |
24890230 |
T |
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| Q |
217 |
gtatattccaggctcagtcaatgccttctcattaagatgaacttgtctggaaagcatttgtagaacttgtttcat |
291 |
Q |
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|||||||||| ||||||||||||||||||| || |||||||||| ||||||||||||||||||| |||||||| |
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| T |
24890231 |
gtatattccatgctcagtcaatgccttctccata--atgaacttgtttggaaagcatttgtagaacatgtttcat |
24890303 |
T |
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